PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g063200.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 310aa MW: 34448.4 Da PI: 8.9018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g063200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.9e-53	17	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv +yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ Csa14g063200.1 17 LPPGFRFHPTDEELVIHYLKRKADSVPLPV-AIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIST 110 79**************************.88***********999999************************************9 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl Csa14g063200.1 111 ggggGNKKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 147 99988889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-60	12	154	IPR003441	NAC domain
PROSITE profile	PS51005	55.714	17	171	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	18	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VIHYLKRKAD SVPLPVAIIA DVDLYKFDPW 60 ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVIST GGGGGNKKVG 120 VKKALVFYSG KPPKGVKSDW IMHEYRLTDN KPNHICDFGN KKNSLRKNNS TTTPRHHHHH 180 HHQYHLDNDN HRHDMMIDDD RFRHVPPSLH FPAIFSDNND PTAIYDGGGG GNYSMNHNFA 240 SGSKQEQFFP PVMMMTTSIN QDSGIGSSLS PSKRFNGGDC SNIVSSMAAT PLMQNQGGIY 300 QLPGLNWYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-65	16	167	14	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g063200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF123311	0.0	AF123311.1 Arabidopsis thaliana NAC domain protein NAM mRNA, complete cds.
GenBank	AY086093	0.0	AY086093.1 Arabidopsis thaliana clone 21243 mRNA, complete sequence.
GenBank	AY099786	0.0	AY099786.1 Arabidopsis thaliana NAM-like protein (At1g52880) mRNA, complete cds.
GenBank	BT000292	0.0	BT000292.1 Arabidopsis thaliana NAM-like protein (At1g52880) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462140.1	0.0	PREDICTED: NAC domain-containing protein 18-like isoform X2
Swissprot	Q9ZNU2	1e-158	NAC18_ARATH; NAC domain-containing protein 18
TrEMBL	R0I6X8	1e-179	R0I6X8_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010462141.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52880.1	1e-161	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Raherison ES,Giguère I,Caron S,Lamara M,MacKay JJ Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures. New Phytol., 2015. 207(1): p. 172-87 [PMID:25728802] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Vialette-Guiraud AC, et al. A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids. Front Plant Sci, 2015. 6: p. 1239 [PMID:26793217]