PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g059500.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 424aa MW: 47184.7 Da PI: 9.6908

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g059500.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	360	405	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq Csa14g059500.1 360 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 405 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	354	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	357	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.27E-11	358	409	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-15	359	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	360	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-9	360	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0042335	Biological Process	cuticle development
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
LTFSFFFFHL TRRRKKNTSR RREILPGEIT HQEERNSKAT KMESEFQQQH FLIHHQQHDH 60 QHQRPRNSGL IRYQSAPSSY FSSFGESIEE FLDRPTSPET ERILSGFLQT TDTSNNVDSF 120 LHHAFNSDGT EKKPPPEVKT EEETEIPVTA MGVVVGDVEI PAASDSIGYA SVSRNLSQNK 180 KRPRDDRNPP PVNNLARHNS SPAGLFSSID VETAYAAVMK SMGGFGGGNV MNTSNTTDAS 240 SLTPRSKLLP PVSRAMSPIS EVDVKPAFSS RLPPRTLSGG FNRSFGNEGS ASSKLSAIAR 300 TQSGGLDQYK TKDEDSASRR PPLAHHMSLP KSFSDIEQLL SDSIPCKIRA KRGCATHPRS 360 IAERVRRTKI SERMRKLQDL VPNMDTQTNT ADMLDLAVQY IKDLQDQVKA LEENRARCRC 420 SSA*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

LTFSFFFFHL TRRRKKNTSR RREILPGEIT HQEERNSKAT KMESEFQQQH FLIHHQQHDH  60
QHQRPRNSGL IRYQSAPSSY FSSFGESIEE FLDRPTSPET ERILSGFLQT TDTSNNVDSF  120
LHHAFNSDGT EKKPPPEVKT EEETEIPVTA MGVVVGDVEI PAASDSIGYA SVSRNLSQNK  180
KRPRDDRNPP PVNNLARHNS SPAGLFSSID VETAYAAVMK SMGGFGGGNV MNTSNTTDAS  240
SLTPRSKLLP PVSRAMSPIS EVDVKPAFSS RLPPRTLSGG FNRSFGNEGS ASSKLSAIAR  300
TQSGGLDQYK TKDEDSASRR PPLAHHMSLP KSFSDIEQLL SDSIPCKIRA KRGCATHPRS  360
IAERVRRTKI SERMRKLQDL VPNMDTQTNT ADMLDLAVQY IKDLQDQVKA LEENRARCRC  420
SSA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00195	DAP	Transfer from AT1G51140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g059500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY034941	0.0	AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBank	AY063120	0.0	AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461947.1	0.0	PREDICTED: transcription factor bHLH122-like
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	R0I6R6	0.0	R0I6R6_9BRAS; Uncharacterized protein
STRING	XP_010461947.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	0.0	bHLH family protein

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]