PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g055190.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 743aa    MW: 82746.9 Da    PI: 8.1499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g055190.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-06261283425
                     ---SGGGGTS..--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartG..tCkyGdrCkFaH 25 
                     ++Crffa  G  +C+ G++C+F+H
  Csa14g055190.2 261 VPCRFFAS-GsgYCRNGNNCRFSH 283
                     68**7777.559************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.896257287IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036258285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSGSGRKRVS KWDTKEEDTQ HPSGNDYPGK SGFRDNDPKH SRFYPEGNGR NGSRRAGPDD  60
DDDDDEHLKS RQHSGEAWPS RSRVSHEDGD AMMGYYDDPR NSSEQDESRQ QYFRQSASKD  120
RARTRRSGSR SNSRSRSRSP SQRVRRDGGG SYDRHKTRAR VSPRSGREFD GRHNRAGDYD  180
WDGSNRKTRD TKYYTEDARE QQPIRVGGRT DYSSDFPEDN TNSRRETSDP ISRNYRNEAG  240
RDRETHRRDA PEGEFHRSSN VPCRFFASGS GYCRNGNNCR FSHHGAPSAR GSPERKPQDE  300
MYSRHDNNNY SGTTERMRNS HRWNDVEKSD ARKSNEVEIS RVSKGMSDAK GNNSSWIDDM  360
EMSPDWNYGV KTVKKPVNEE HGSISQSSQS QILKDTLAPA YEHAVASIAQ QDGNRRTVGM  420
FSTVGEKTVA SSHHNNFINN LATTAPPVQA FSQNTENHMA VPYQSTPLAV GGSQVLLPAA  480
TNLPGGLNSS NPENGNALNN VSREELNHIS NISASLAQFF GNGQPIPIPN LHSTLNPKLA  540
MQVPGVYGVK EQSSHTQSDF PSNNSIHTGG VPAVPALQIH NSEAQQVQIP ENLVSLAVNP  600
KPLSEENQDK KTDEEASKKP DGKKTGEEED NIEDAENVVE EEEDDGAGDE NTKKEKDPKG  660
MRAFKFALVE IVKELLKPAW KEGGMNKNAY KNIVKKVVDK VTGAIQSGNI PQTQEKIDHY  720
LSASKPKLTK LVQAYVSKVK KS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g055190.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461740.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010461741.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010461742.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
SwissprotQ9LIH51e-174C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLR0GVC10.0R0GVC1_9BRAS; Uncharacterized protein
STRINGXP_010461740.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-17C3H family protein