PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g050900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 199aa MW: 21922.7 Da PI: 10.4362

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g050900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.1e-21	93	152	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Csa14g050900.1 93 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 152 7***************99************************************97 PP
2	Wus_type_Homeobox	117.4	6.7e-38	93	154	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Csa14g050900.1 93 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 154 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.33E-12	88	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.944	88	153	IPR001356	Homeobox domain
SMART	SM00389	2.0E-7	90	157	IPR001356	Homeobox domain
CDD	cd00086	1.03E-5	93	154	No hit	No description
Pfam	PF00046	6.5E-19	93	152	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-8	94	152	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MKVHEFSNGF SSSWGQHDST SSLSLSCKRL RPLAPKLSGS PPSPPSSSSG VTSATFDLKS 60 FIRPDQTGPT KCEHKRDPPQ VSSLTLETPP GGTRWNPTQE QIGILEMLYK GGMRTPNAQQ 120 IEHITSQLGK YGKIEGKNVF YWFQNHKARE RQKQKRNNLI SISCQTSFTT TSVSNPSVTT 180 KTRTSSSLDI RVCLISYS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g050900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493501	0.0	AB493501.1 Arabidopsis thaliana At1g46480 mRNA for hypothetical protein, partial cds, clone: RAAt1g46480.
GenBank	AY251396	0.0	AY251396.1 Arabidopsis thaliana WOX4 protein mRNA, complete cds.
GenBank	BT010692	0.0	BT010692.1 Arabidopsis thaliana At1g46480 mRNA, complete cds.
GenBank	BT010974	0.0	BT010974.1 Arabidopsis thaliana At1g46480 mRNA, complete cds.
GenBank	FJ440850	0.0	FJ440850.1 Arabidopsis thaliana WOX4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461506.1	1e-138	PREDICTED: WUSCHEL-related homeobox 4 isoform X1
Swissprot	Q6X7J9	1e-113	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	R0I7Y8	1e-116	R0I7Y8_9BRAS; Uncharacterized protein
STRING	XP_010461506.1	1e-138	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-103	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]