PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g047200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 317aa    MW: 34423.7 Da    PI: 4.8946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g047200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20144193255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Csa14g047200.1 144 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 193
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.19E-35143203No hitNo description
PROSITE profilePS5103223.565144201IPR001471AP2/ERF domain
SMARTSM003804.3E-40144207IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-23144202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32144202IPR001471AP2/ERF domain
PfamPF008479.1E-15145193IPR001471AP2/ERF domain
PRINTSPR003672.8E-11145156IPR001471AP2/ERF domain
PRINTSPR003672.8E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MADFFGGSGG HGGELMEALQ PFYKSASTSA SDSSFGSSNA AFVSAPNDPY SSSSYYNPHS  60
SFTTTYPDLY AGSMTYPSSF GSDLQQPDSL EQNYQSQFHY QNNITYPHED NTCMLNFIDP  120
NQPGFMTQPG PVSGSGLVSK PAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA  180
ALAYDRAAFK LRGDSARLNF PALRYQTGSS PSDSGEYGPI QAAVDAKLEA ILAEPKNQPG  240
KTERSSRKRA KATASSAEQP AAPQQHSGSG ESDGSGSPTS DVMVTEMCEE AEMPWNENFM  300
LGKCPSYEID WASILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21143201160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g047200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062280.0AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence.
GenBankAC0216660.0AC021666.5 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete sequence.
GenBankAK2284150.0AK228415.1 Arabidopsis thaliana mRNA for putative AP2 domain containing protein RAP2.4 gi|2281633, complete cds, clone: RAFL14-93-D21.
GenBankBT0057580.0BT005758.1 Arabidopsis thaliana clone RAFL14-93-D21 (R20359) putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankBT0060780.0BT006078.1 Arabidopsis thaliana clone U20359 putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461345.10.0PREDICTED: ethylene-responsive transcription factor ERF055-like
SwissprotQ9SKW50.0ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLR0ID660.0R0ID66_9BRAS; Uncharacterized protein
STRINGXP_010461345.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-133ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]