PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g042520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 146aa MW: 16844.6 Da PI: 4.3334 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.9 | 1.9e-10 | 6 | 40 | 1 | 36 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevike 36 lppGfrFhP deelv +yL+++ eg ++el e+i++ Csa14g042520.1 6 LPPGFRFHPADEELVGYYLHRRNEGLEIEL-EMIPN 40 79************************9988.55554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-9 | 4 | 40 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-8 | 7 | 71 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MVGSSLPPGF RFHPADEELV GYYLHRRNEG LEIELEMIPN GFIQRNPSCR IEIWNGFSSG 60 IATENTRATK SETTHRSITF LQGNSQSQIE EDSGFQIFAS PEFDYPPEFF AADLNFDWEL 120 ENPFMFDYHS EAHMNNEVMN YHILR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g042520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 3e-41 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F5D14 | 3e-41 | AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890994.1 | 2e-26 | NAC domain-containing protein 86 | ||||
TrEMBL | A0A1J3H6A8 | 4e-25 | A0A1J3H6A8_NOCCA; NAC domain-containing protein 86 | ||||
STRING | XP_010463078.1 | 6e-65 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32510.1 | 6e-26 | NAC domain containing protein 11 |