PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g041830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 311aa    MW: 35802.8 Da    PI: 9.3273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g041830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.65.6e-172466950
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    +++ ++ R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa14g041830.1 24 KTTNLALREQTMFKKASELSILCDVEVCVIYYDRDGELvRTWP 66
                    5788999*****************************9746887 PP
2SRF-TF53.53.2e-17110152950
                     HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF   9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 
                     +++ ++ R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa14g041830.1 110 KTTNLALREQTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 152
                     6788999*****************************9746887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-61267IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.471361IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-121772IPR002100Transcription factor, MADS-box
PfamPF003196.9E-123162IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-698153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.62499147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-14102187IPR002100Transcription factor, MADS-box
CDDcd002661.29E-17106179No hitNo description
PfamPF003193.4E-12117148IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLTKDKTTKL LSVRNRRCFK KQPKTTNLAL REQTMFKKAS ELSILCDVEV CVIYYDRDGE  60
LVRTWPEDQS KLLLFLSVNK ASSSSTMLTK DKTTKLFSVR NRRCFKKQPK TTNLALREQT  120
MFKKASELSI LCDVEVCVIY YNRDGELVRT WPEDQSKVRD MAERFSKLND RERRKKSTNL  180
SFFLNKKTLK DKKSSFDIMD YKFSENVLEM EASLESSIRV LQDKILRLQN QTEPDQNSVV  240
SSDGFFTTDP SLMSGGVSVT EKDLSTPSLT QQNQSKVSVF LYNHDNGSFC QLPDSSVSTF  300
DPSTKLDYEF *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g041830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463060.11e-162PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N21e-72AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1191e-88R0H119_9BRAS; Uncharacterized protein
STRINGXP_010463060.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.14e-75AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]