PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g036150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 134aa    MW: 14705.6 Da    PI: 4.7711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g036150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.39.8e-0977131148
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLp 48 
                     lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp
  Csa14g036150.1  77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP 131
                     799***********9.89*****999956644322..22222333336*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-967132IPR003441NAC domain
PROSITE profilePS5100511.63877133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSWCDGSDDN YDLNIERVSN IDHPSIQLKD QSQSCVTSGP DSKIIVESPI MITCPSCGHK  60
IHHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID EFIPTLEGEN  120
GICYTHPEKL PGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g036150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864761e-147AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478220.12e-92PREDICTED: NAC domain-containing protein 10
RefseqXP_019099249.12e-92PREDICTED: NAC domain-containing protein 10
SwissprotF4HY619e-84NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV53e-88R0GQV5_9BRAS; Uncharacterized protein
STRINGXP_010460643.18e-93(Camelina sativa)
STRINGXP_010478220.18e-92(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2108355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.14e-86NAC domain containing protein 10