PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g032160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 426aa    MW: 48020.7 Da    PI: 8.8633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g032160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  C k+F++   L  Hir H
  Csa14g032160.1  9 FVCRFCYKTFPSGKALGGHIRIH 31
                    89*******************99 PP
2zf-C2H211.90.00069370392123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa14g032160.1 370 HECPICFRVFKSGQALGGHKRSH 392
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-6536No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.427936IPR007087Zinc finger, C2H2
SMARTSM003550.1931IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-6929IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003553.25981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
PfamPF139128.8E-46083IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307122149IPR007087Zinc finger, C2H2
SMARTSM003550.027122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
PfamPF139121.1E-4124146IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388370397IPR007087Zinc finger, C2H2
SMARTSM003550.14370392IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-10370393IPR007087Zinc finger, C2H2
PROSITE patternPS000280372392IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDEGKEKKFV CRFCYKTFPS GKALGGHIRI HSNENSVDSD RYNRVKKKRL VDQREKQQVC  60
CRRCSKKFVS LKALRAHMVC HCEGEKKMMM DSQSDDDESE TSSAPLRKRS RRVMAHKHKQ  120
QFFCKICDKG FASLKAISAH MACHSEGEKM LMDSQSDTDS ETSSALKWSK RVMRRSNSES  180
FSDGSLSFDS DIDQEVGEGA YLLMVLSRGS SFKKRRNFVM NSLGESSENN SGIVETKSPS  240
GEELKILNVK SQVIETDDQL RSANDNGVSL CDSDGSDSDY FMNGPKKSDS DISVEGSLKN  300
TGFGSEFNNR LHRFRNSDKK GSLYELSKSK KDLCSYETDS CADTNSKIHR YRDSKSPVVK  360
KAGGEKKTSH ECPICFRVFK SGQALGGHKR SHSYENQEHN QVSEIRNQIN LNVPASDIDQ  420
WNQRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g032160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460291.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLR0ISX20.0R0ISX2_9BRAS; Uncharacterized protein
STRINGXP_010460291.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-105C2H2-like zinc finger protein