PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g025880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 400aa MW: 45354.6 Da PI: 6.635 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Csa14g025880.1 77 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 137 89*****************99**************************************97 PP | |||||||
2 | Homeobox | 62.3 | 7.4e-20 | 277 | 337 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +++ + +p+ ++++e+A++l ++ e++V++WFqNrRa+ k+ Csa14g025880.1 277 RHRWTPTSKQLQILENIYKEgSGTPNPRRIKEIATELsehgQIMEKNVYNWFQNRRARSKR 337 89*****************99**************************************97 PP | |||||||
3 | Wus_type_Homeobox | 100.3 | 1.4e-32 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Csa14g025880.1 76 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP | |||||||
4 | Wus_type_Homeobox | 100.8 | 9.8e-33 | 276 | 339 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++yk+G tPn ++i++i++eL+e+G+i++kNV++WFQNr+aR+++kq Csa14g025880.1 276 TRHRWTPTSKQLQILENIYKEGSGTPNPRRIKEIATELSEHGQIMEKNVYNWFQNRRARSKRKQ 339 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-16 | 70 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-18 | 70 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.9 | 73 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-14 | 75 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-18 | 77 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.43E-12 | 81 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 273 | 341 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.495 | 273 | 338 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 274 | 342 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.7E-13 | 275 | 342 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.82E-12 | 277 | 339 | No hit | No description |
Pfam | PF00046 | 1.3E-17 | 277 | 337 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEREIQNDAY NGRVMTEEQM EILRKQIAVY AVICDQLVLL HNSLSSYHPF SSGIRPMVGG 60 YFDQMGSSSS SHRISSRHRW TPTSTQLQIL ESIYEEGSGT PNRRRIREIA TELSEHGQIT 120 ETNVYNWFQN RRARSKRKQP QTTTTTANGQ ADDVAVTTEE RRSCGDSGGL ESYEHILFPS 180 PDLGIEHLKE RGESKFVKEE MEQGSLNGTY DGRVMTEEQM ETLRKQIAIY AIICDQLVLL 240 HNSLPSFPPL SSGMNMMGGG YFDPMVASSS AHGMSTRHRW TPTSKQLQIL ENIYKEGSGT 300 PNPRRIKEIA TELSEHGQIM EKNVYNWFQN RRARSKRKQP QTTTVTGPTD DAAVTTEERS 360 YGDSGGFESY EHILFPSPDR GIEHLLSREK FMENKFHTG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 330 | 338 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g025880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010459763.1 | 1e-147 | PREDICTED: putative WUSCHEL-related homeobox 10 | ||||
Swissprot | Q9LM84 | 1e-128 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A178W4J5 | 1e-125 | A0A178W4J5_ARATH; WOX14 | ||||
STRING | XP_010459763.1 | 1e-146 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-120 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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