PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g015450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 256aa    MW: 29081.3 Da    PI: 8.3224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g015450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1374124355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++h+ +Er+RR++  s +  Lr llP+      ++K s ++ +e+Av+YIk+Lq
  Csa14g015450.1  74 AKHKDIERQRRQEAASLYKSLRYLLPSqY---IKGKRSSSDHVEEAVNYIKDLQ 124
                     68*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.27E-1169138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-869128No hitNo description
PROSITE profilePS5088812.34171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-974136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1074124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDFANSSLFT LNFPHEKDLD FSSLVTSSRL ISFQEPNPII HCAGIQKDGR QKVCETTITS  60
EIRKGVDEPK HKIAKHKDIE RQRRQEAASL YKSLRYLLPS QYIKGKRSSS DHVEEAVNYI  120
KDLQKKIKEI SEKRDRTITH RSSTSKCSIR SLASSPSSTC SCVGDTHMAV VVSPCLIGLE  180
IVVSSCYRHE FFLSSVLKLL AQEQCLNVVS CISTRQPQRF IHTIISEVEE GIEVYFPEIH  240
EKIMEMGRSS YVYLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g015450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458680.10.0PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-122BH055_ARATH; Transcription factor bHLH55
TrEMBLR0I2Y41e-129R0I2Y4_9BRAS; Uncharacterized protein
STRINGXP_010458680.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]