PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g012170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 20307.4 Da PI: 10.8844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.8 | 0.00011 | 16 | 56 | 2 | 47 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 r+ n rE+ RR r+++ f+ L +++ + ++l + + Csa14g012170.1 16 REQRNLREKERRMRMKHLFSILSSHVSPT-----RRLPVPQLIDQS 56 6778*********************9885.....344444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-11 | 12 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.766 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-5 | 16 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MERAREIGEG SSSSFREQRN LREKERRMRM KHLFSILSSH VSPTRRLPVP QLIDQSVSYM 60 IQLKEKVNYL REKKRTLLRG KVQNRSEGSS SHQPKLSINS RDSTIEMNLV MDSNIKRVLL 120 RELVSVFEEE GAQVMSANLQ NLNNMTFYTI IAQAIISRIG IDSSRIEERV RCIIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 25 | LREKER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g012170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007067 | 2e-98 | AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence. | |||
GenBank | CP002684 | 2e-98 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010458412.1 | 1e-123 | PREDICTED: uncharacterized protein LOC104739674 | ||||
Swissprot | Q9XIJ1 | 1e-97 | BH168_ARATH; Transcription factor bHLH168 | ||||
TrEMBL | R0GT31 | 4e-99 | R0GT31_9BRAS; Uncharacterized protein | ||||
STRING | XP_010458412.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2382 | 21 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 4e-84 | bHLH family protein |