PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g004870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 200aa    MW: 21473.9 Da    PI: 4.43
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g004870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-172372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIr p     +  r +lg+f tae+Aa+a++ a+++++g
  Csa14g004870.1 23 RYRGVRKRP-WGKYAAEIRNPI----SkNRKWLGTFNTAEDAARAYDSAAREFRG 72
                    69*******.**********72....359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-332386IPR001471AP2/ERF domain
PROSITE profilePS5103223.5912380IPR001471AP2/ERF domain
CDDcd000182.82E-292380No hitNo description
Gene3DG3DSA:3.30.730.101.3E-302380IPR001471AP2/ERF domain
PfamPF008476.6E-112372IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212381IPR016177DNA-binding domain
PRINTSPR003672.8E-102435IPR001471AP2/ERF domain
PRINTSPR003672.8E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTPQDQKSVT NAAGGGEMVR EVRYRGVRKR PWGKYAAEIR NPISKNRKWL GTFNTAEDAA  60
RAYDSAAREF RGSKAITNFP LPGHGRGALV TPVRTIPPGA RDVEISFSLS EPAGAQDVLS  120
PAVAEAVAGF YLDQPEAIEL REELDRVYPL GFEPDDMGLS IGLETPVEVE PESSSAVEVE  180
PESYSAVDGN VNLDLNLGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-202481361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-202481664ATERF1
3gcc_A2e-202481664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g004870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457396.11e-142PREDICTED: ethylene-responsive transcription factor 10-like
SwissprotQ9ZWA24e-59ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLR0I9862e-57R0I986_9BRAS; Uncharacterized protein
STRINGXP_010457396.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-47ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]