PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g004560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 520aa    MW: 59981 Da    PI: 4.4136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g004560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.91.3e-2591353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya.tgkrknr.atksgyWkatgkdkevl 93 
                     +G rF P+d  lv ++L + +++k+ ++   i+++d+y++ePw Lp+  +   ++kewy+F+++ + ++ + + + r   k+g+W++  ++++++
  Csa14g004560.1   9 VGTRFVPNDLGLVRFHLPNMMKRKQSSV--DITTMDVYQAEPWLLPHVSNRlfKKKEWYYFVPKFRDKRpSRSVPGRgGSKAGVWRSGVTKRNIK 101
                     79***********************888..49**************5333345889******9977654256677777799************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ +g kk L++++  + + +ktdW m ey+l
  Csa14g004560.1 102 D-GNKIIGYKKLLTYHTIVNGEKKKTDWRMTEYSL 135
                     9.999***********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.0397153IPR003441NAC domain
SuperFamilySSF1019413.53E-277151IPR003441NAC domain
PfamPF023655.2E-139135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MEKPYHHLVG TRFVPNDLGL VRFHLPNMMK RKQSSVDITT MDVYQAEPWL LPHVSNRLFK  60
KKEWYYFVPK FRDKRPSRSV PGRGGSKAGV WRSGVTKRNI KDGNKIIGYK KLLTYHTIVN  120
GEKKKTDWRM TEYSLHGVDE GFQDLVLCLI RDKTKTKVDK RINYVPQTQT QPRPHSQYQL  180
QPQPQVAAEN TNNILPNQLV HKEADFTGFA EELETIMLEG QEERDATEQQ QGEEIPQIHD  240
NNNNVMMSNQ QVQKEADLTS FADELETIML EGQEDRDITE QQQEEEIPMI PLGQIHENSK  300
NVMMSNQQVQ EEADITGFAD ELETTMLDGD GDATEKVQEE AGLAGLANEL DMLMREGEKD  360
RVIQLQQQQL YEETQSGNND VIPTPPPMNN NNNGIMIRLG GQEEREFTQQ QQKQLEEVLP  420
IPPPMHNNNN NDDVMMKWRQ EMFDVEEFLM KDNEGEDVTE QEERFQLLVQ PIYQAQEWSQ  480
LVGDQEDDTM MMIDNPNNAQ ALGNYEFTSI NPVPRTGQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g004560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094364.10.0PREDICTED: NAC domain-containing protein 6-like
TrEMBLR0I9X61e-134R0I9X6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010462549.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-40NAC domain containing protein 6