PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g003150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 311aa    MW: 33426.9 Da    PI: 6.7445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g003150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09163207554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Csa14g003150.1 163 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 207
                     99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANNNNPHDN ISDPSPTDDF FEQILGLSNF SASSGSGLSG IGGGLSAPPM MLQLGGSAGD  60
EGNHHNHNMG AIGGGPGPVG FHNHMFPLGL SLDQGKGHGF LKPEGLLPSG KRFQDDVIDN  120
RCSSIKPVYH GQPMSQPAPP MPHQQSTIRP RVRARRGQAT DPHSIAERLR RERIAERIRA  180
LQELVPTVNK TDRAAMIDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT EMPLSSSIED  240
ETQAVWEKWS NDGTERQVAK LMEENVGAAM QLLQSKALCI MPISLAMAIY HSQPPDTSSS  300
IVKPEMNPPP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g003150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516920.0AF251692.2 Arabidopsis thaliana putative transcription factor BHLH7 mRNA, complete cds.
GenBankAY0544690.0AY054469.1 Arabidopsis thaliana Unknown protein (At1g03040; F10O3.14) mRNA, complete cds.
GenBankAY1146330.0AY114633.1 Arabidopsis thaliana unknown protein (At1g03040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457313.20.0PREDICTED: transcription factor bHLH7-like
SwissprotQ93Y001e-169BH007_ARATH; Transcription factor bHLH7
TrEMBLR0IIQ61e-180R0IIQ6_9BRAS; Uncharacterized protein
STRINGXP_010457313.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-164bHLH family protein