PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g002590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 587aa    MW: 67098.7 Da    PI: 4.4998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g002590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.21.2e-2171315128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkev 92 
                     ++F P+d  l ++yL+++++++k     +ik++++y+ +Pw Lp+  ++  +++ +f+  +++ +a  k +nr+      ++ g+Wk+ g+++++
  Csa14g002590.1   7 LKFFPSDMTLADHYLRRRIDTDKE---GFIKDIKLYEDHPWLLPHVNNNlFNEKEFFYNVKRTLKA-RKTPNRKvlgrggITIGTWKSNGSKEDI 97 
                     79******************9993...56***************5333323344466666555554.45666654666666689*********** PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++ ++g k+ L +yk  + + + t W+m ey l
  Csa14g002590.1  98 VDRNKVVIGHKTELSYYK--HGDLTATGWCMTEYWL 131
                     *****************5..555569********87 PP
2NAM262.7e-0819424878128
             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy...kg.rapkgektdWvmheyrl 128
                        g+W+++g ++++l++++ ++g k+   +y   +g  ++kge t W+m ey l
  Csa14g002590.1 194 SGGGTWNKSGLKTAILDANDVVIGYKQEYSYYrhvRGqPKKKGEATGWCMTEYWL 248
                     5689****************************66634378899**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.0143149IPR003441NAC domain
PfamPF023652.8E-126130IPR003441NAC domain
SuperFamilySSF1019412.22E-247149IPR003441NAC domain
SuperFamilySSF1019412.62E-12177265IPR003441NAC domain
PROSITE profilePS510059.028191265IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MADPRDLKFF PSDMTLADHY LRRRIDTDKE GFIKDIKLYE DHPWLLPHVN NNLFNEKEFF  60
YNVKRTLKAR KTPNRKVLGR GGITIGTWKS NGSKEDIVDR NKVVIGHKTE LSYYKHGDLT  120
ATGWCMTEYW LASKNIEFQE TVLCYIRGKK KQVKNVSSYA SSNRVSAPRE DMITMRTCES  180
GNKIIRTVSG RGGSGGGTWN KSGLKTAILD ANDVVIGYKQ EYSYYRHVRG QPKKKGEATG  240
WCMTEYWLGS DENAAEVVLC NIRVKKDVDD QFQLQTTETN NNIVEHPPLD NNTVSNALVT  300
GDGGEGYDTE TGQQTMDADD YNFMFDTELL DFIDQQQPLM LPQDSIPPLG GQDLRSTVDQ  360
HMDEYAKELE NILDKDEDDE YDRVTQQQQH PHIPLPLQVQ DSGNPLVITE DECVGRQDIL  420
NLDQHMEDYA EELENLLDKD EEEEDVDSAS QQQHPHIPLP PQVQDSGNPL VIMEDECVDQ  480
DIMFNLESVT QQQEQEKIVD TLGEMDCARY EMQGYLYFQD SYLAGIQEMS PWDNMLTNTN  540
PFGLVFNTHG YEMQEPPVTN GVNKKSLGCV ANCAMQEQRR KRRKQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g002590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462533.10.0PREDICTED: uncharacterized protein LOC104743115
TrEMBLR0GLG87e-81R0GLG8_9BRAS; Uncharacterized protein
STRINGXP_010462533.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2021424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.15e-23NAC domain containing protein 6