PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g002230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 25813.6 Da PI: 7.4988 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.4 | 5.7e-36 | 10 | 139 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 GfrF t+ee++++yL+ k +e+++ +++evi++v+i++++Pw+Lp+ v++++ wyfF + ++ky+tg+r+nr+t++g+Wk+tg++ ++ Csa14g002230.1 10 IGFRFCLTEEEIIDYYLRIKnLESNTSHVDEVISTVNICSSDPWHLPSmattIVETTDLVWYFFGRIENKYNTGDRQNRKTHTGFWKKTGETVDI 104 7****************988355555888889***************5345434445569*********************************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k ++e++g k++L+fy + g +++Wvmhey++ Csa14g002230.1 105 KRKsgNREKIGEKRVLMFY---LKGGLNSKWVMHEYHA 139 *99888889**********...5667789*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-38 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.421 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-19 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSLSKLANTI GFRFCLTEEE IIDYYLRIKN LESNTSHVDE VISTVNICSS DPWHLPSMAT 60 TIVETTDLVW YFFGRIENKY NTGDRQNRKT HTGFWKKTGE TVDIKRKSGN REKIGEKRVL 120 MFYLKGGLNS KWVMHEYHAT FFSPPNQMMT YTLCKVEFKG EMREIEKSRS LYPAPMSNDN 180 IGGLMIKNPC QITGSPLDLV ATDWAMGNIL NPDFVGLLDG NDMKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swm_B | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swm_C | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swm_D | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swp_A | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swp_B | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swp_C | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
3swp_D | 6e-17 | 3 | 156 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g002230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457193.1 | 1e-170 | PREDICTED: NAC domain-containing protein 5-like | ||||
Swissprot | O81914 | 3e-80 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | R0I7D2 | 1e-110 | R0I7D2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010457193.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 1e-82 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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