PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g001070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20772.5 Da PI: 6.1789 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 157 | 173 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C++C+++Fs+ L+ Csa14g001070.1 157 HECTICHRVFSSGQALE 173 78*********987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.78E-6 | 82 | 113 | No hit | No description |
Pfam | PF13912 | 7.6E-9 | 84 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.972 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-6 | 156 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNSSCIYFVM FSRGQHDEDN MSTRRPWKRP DSHHHKHLNL SANEDEELAN CLVLLSNSGE 60 AXKKLFNHRS EIRIPPSSGT TAQVFQCKAC KKLFTSHQAL GGHRASHKKV KGYFASQDKE 120 EEDEEEYKED DDEEEDEMED EDKSTAHIPR KRSSNTHECT ICHRVFSSGQ ALEQTHCTSS 180 N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g001070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493422 | 4e-84 | AB493422.1 Arabidopsis thaliana At1g02040 mRNA for hypothetical protein, partial cds, clone: RAAt1g02040. | |||
GenBank | BT030040 | 4e-84 | BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds. | |||
GenBank | CP002684 | 4e-84 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | U89959 | 4e-84 | U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645586.1 | 4e-64 | zinc finger protein ZAT10 | ||||
TrEMBL | R0GSW4 | 2e-61 | R0GSW4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1968s0138.1.p | 2e-62 | (Capsella grandiflora) | ||||
STRING | XP_006305993.1 | 3e-62 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13895 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-17 | C2H2-like zinc finger protein |