PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g057200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 205aa    MW: 21660.2 Da    PI: 4.515
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g057200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.2e-2911102191
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                     +C aCk+lrr+C ++Cv+apyf +e+ +++fa+vhk+FGasn +kll  +pe++r da+ +l yeA ar+rdPv +  + + ++q ql++l+
  Csa13g057200.1  11 PCGACKFLRRQCLSECVFAPYFDSEEgTSHFAAVHKVFGASNASKLLMMIPESRRLDAVVTLSYEALARLRDPVMNLQAELADVQTQLSSLQ 102
                     7*********************998879***********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.68410112IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-2811103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSGSTTGGGG PCGACKFLRR QCLSECVFAP YFDSEEGTSH FAAVHKVFGA SNASKLLMMI  60
PESRRLDAVV TLSYEALARL RDPVMNLQAE LADVQTQLSS LQGLVQGNPQ NNSATTEAAS  120
SFNEPLIASV VDNKSNVSSS SSSHINCMQR QQAKEESGES VDLSTLLGLE DPAEEDGDLN  180
ALAREFVCSK YLTGGQSSPI KTIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3141024101LOB family transfactor Ramosa2.1
5ly0_B2e-3141024101LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g057200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426727.11e-121PREDICTED: LOB domain-containing protein 31
SwissprotO813226e-92LBD31_ARATH; LOB domain-containing protein 31
TrEMBLR0FHZ71e-105R0FHZ7_9BRAS; Uncharacterized protein
STRINGXP_010426727.11e-120(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-83LOB domain-containing protein 31