PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g056030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 416aa    MW: 46909.6 Da    PI: 5.9851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g056030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.8e-12232277454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+ +       ++Ka+ L  Av YI+sL
  Csa13g056030.1 232 SHVEAERQRREKLNHRFYALRAVVPNvS------GMDKASLLSDAVSYIQSL 277
                     699***********************55......69**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-3020173IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.272228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-17228293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17232293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-13232281No hitNo description
PfamPF000102.6E-9232277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLSITQQTQA VVSSSSTDLL QQKLRFLVEK SPDQWAYIIF WQKIIDDQSD QSYLVWVDGH  60
FCGNKNNKTQ ENHTTKSIEC ELMMDCGDIE LFYATSFYGD DGSRRKEISD ESLVWLTGLD  120
ELRFSNYERA KEASFHGVHT FVSAPIHNGI IELGSSDSIK QNWNFINRVT SMFGSGQTLE  180
LTDQTGSYPK PEESDYSEIG NQQITSEKIR RTKLETTGVA TAKENHPSPG FSHVEAERQR  240
REKLNHRFYA LRAVVPNVSG MDKASLLSDA VSYIQSLKTR INDLESEIKN LKTILTAETD  300
HNYNSSNRSP SFVDKVNQKP SKSNLEVQVK VVGDEAVVRV QTENVNHPTC ALMTTLMEMD  360
CRVQHANASR LGQIMVQDVV VLVPDRLRSE DSIGTTLVRN LAKITKLNFA INETR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-19231295771Transcription factor MYC2
5gnj_B2e-19231295771Transcription factor MYC2
5gnj_E2e-19231295771Transcription factor MYC2
5gnj_F2e-19231295771Transcription factor MYC2
5gnj_G2e-19231295771Transcription factor MYC2
5gnj_I2e-19231295771Transcription factor MYC2
5gnj_M2e-19231295771Transcription factor MYC2
5gnj_N2e-19231295771Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g056030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456175.20.0PREDICTED: transcription factor bHLH14-like
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV070.0R0GV07_9BRAS; Uncharacterized protein
STRINGXP_010456175.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]