PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g055830.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 478aa MW: 53232.6 Da PI: 7.3163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g055830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	3.9e-14	118	169	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i+ A+++Ik+L+ Csa13g055830.1 118 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 169 79*************************9...89***************996 PP
2	HLH	44	3.9e-14	273	324	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i+ A+++Ik+L+ Csa13g055830.1 273 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 324 79*************************9...89***************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.47E-12	116	173	No hit	No description
SuperFamily	SSF47459	4.32E-16	116	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.72	117	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-13	117	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-12	271	328	No hit	No description
SuperFamily	SSF47459	4.32E-16	271	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.72	272	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-13	272	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	273	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	278	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MGGLMRFGEL EEQFSQLSDT TIEEKVPFLQ MLQCIDPNFT TAEPFLQSFL QIQTLEPKSC 60 HTHTLDATTI KRDPGQTDDP DKDPRTEDGG AATTTVLKEK RKRKRTRAPK NNDEVENQRM 120 THIAVERNRR RQMNEHLNSL RSLMPPSFLQ RGDQASIVGG AIDFIKELEQ LLQSLEAEKR 180 NDGTNETPKT ASSTSSSSRP CTTNSSIQTL EPKSCHTHTL DATTIKRDPG QTDDPDKDPR 240 TEDGGAATTT VLKEKRKRKR TRAPKNNDEV ENQRMTHIAV ERNRRRQMNE HLNSLRSLMP 300 PSFLQRGDQA SIVGGAIDFI KELEQLLQSL EAEKRNDGTN ETPKTASSTS SSSRPCTTNS 360 SVSSVSTTSE GGFTARFGGG ETAEVEATVI QNHVSLKVRC KRGKGQILRA IVSIEELKLT 420 ILHLTISSSF DFVVYSFNLK IEDGCKLGSA DEIATAVHQI FEQINGEMMW SNLSRRT*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MGGLMRFGEL EEQFSQLSDT TIEEKVPFLQ MLQCIDPNFT TAEPFLQSFL QIQTLEPKSC  60
HTHTLDATTI KRDPGQTDDP DKDPRTEDGG AATTTVLKEK RKRKRTRAPK NNDEVENQRM  120
THIAVERNRR RQMNEHLNSL RSLMPPSFLQ RGDQASIVGG AIDFIKELEQ LLQSLEAEKR  180
NDGTNETPKT ASSTSSSSRP CTTNSSIQTL EPKSCHTHTL DATTIKRDPG QTDDPDKDPR  240
TEDGGAATTT VLKEKRKRKR TRAPKNNDEV ENQRMTHIAV ERNRRRQMNE HLNSLRSLMP  300
PSFLQRGDQA SIVGGAIDFI KELEQLLQSL EAEKRNDGTN ETPKTASSTS SSSRPCTTNS  360
SVSSVSTTSE GGFTARFGGG ETAEVEATVI QNHVSLKVRC KRGKGQILRA IVSIEELKLT  420
ILHLTISSSF DFVVYSFNLK IEDGCKLGSA DEIATAVHQI FEQINGEMMW SNLSRRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	284	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g055830.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099780	0.0	AY099780.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
GenBank	AY128881	0.0	AY128881.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019089937.1	1e-174	PREDICTED: transcription factor bHLH57-like
Swissprot	Q9M128	1e-142	BH057_ARATH; Transcription factor bHLH57
TrEMBL	R0HBR9	1e-144	R0HBR9_9BRAS; Uncharacterized protein
STRING	XP_010456154.1	1e-173	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14696	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	1e-128	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]