PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g055570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 1031aa    MW: 120877 Da    PI: 6.2193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g055570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.62e-22111273128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     pG rF+Pt  +l+++yL+ + egk+ +    i e++iy+ ePw L+  ++++++++ w++F++r k+   +kr +r++ +g+Wk+ g+  ++++ 
  Csa13g055570.1  11 PGSRFNPTSLQLIDRYLRWRKEGKSSSY---IYEMNIYEKEPWLLQhvRHFRSKRNMWFYFFTRTKAD--SKRMSRVAGAGTWKSNGH-VDIKK- 98 
                     9*******************99999655...9*************95337777888998888887765..57**************99.78888. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g +vg+ + + f      k ekt Wvmhey l
  Csa13g055570.1  99 DGVKVGTMQLISFR----IKDEKTGWVMHEYIL 127
                     9999**99999997....34468********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-267148IPR003441NAC domain
PROSITE profilePS5100528.8519148IPR003441NAC domain
PfamPF023658.2E-1511126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MMVTRRRSQI PGSRFNPTSL QLIDRYLRWR KEGKSSSYIY EMNIYEKEPW LLQHVRHFRS  60
KRNMWFYFFT RTKADSKRMS RVAGAGTWKS NGHVDIKKDG VKVGTMQLIS FRIKDEKTGW  120
VMHEYILDDH QVKQRSHQEV VLCTIKFKPG KDKTLYAYAP RFEPIVIGQP QPQPPRGEEE  180
NQNRNDVHVA AAEDIQYLGA PPPRETQQGI EQHRDLGSYG QLAHQQSQIL GLVEGSDHQH  240
HGYGYMAEYY NQPRRQEMNG SHTAHPYDPS QLPMELQEQY KLAVQHQQLR MEQHQRQILG  300
LVEGSDHQHH GYGYMAEYYN QPRRQEMDGS HTAHPYDPSQ LPMELQEQYK LAVQHQQLRM  360
EQHQRQILGL VEGSDHQHHG YGYMAEYYNQ PRRQEMDGSH SAHPYDPSQL PMELQEQYIL  420
AVQHQQLRME QHQRQILGLV EGSDHQHHGY GYMAEYYNQP RRQEMDGSHS AHPYDPSQLP  480
MELQEQYILA VQHQQLRMEQ HQRQILGLVE GSDHQHHGYG YMAEYYNQPR RQEMDGSHTA  540
HPYDPSQLPM ELQEQYILAV QHQQLRMEQH QRQILGLVEG SDHQHHGYGY MAEYYNQPRR  600
QEMDGSHTAH PYDPSQLPME LQEQYILAVQ HQQLRMEQHQ RQILGLVEGS DHQHHGYGYM  660
AEYYNQPRRQ EMDGSHTAHP YDPSQLPMEL QEQYILAVQH QQLRMEQHQR QIIGQATHVS  720
SQLPVMMMNQ SIEEHQYGEP YHQRRDLSVI HMETQEQDNM VGNLASQLNH EGQNNVPLMT  780
MNRTTETPHL TQKQQQPCAQ ATTNNLMHEH YGYGNMAEYL NHICRQETDP PLSAQAIGVH  840
HRIGSSGLYS AQHNDQNHQN VTSFKEDEYD YNHLMHLFEG LPEDTDPSQL PMELQEEYIL  900
GDQYQNFSME QQQHQINGQA THLSSQLPVS MNQAIDEPHY CQPYHQSNHL SVVPMETQQQ  960
GNEEQDNVPL MTTNQTTEPP QLTQEQQKPC EQATTRNELT QEMDPEIASL LFGQNITVEE  1020
AMFMSLLRNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-131114522165NAC domain-containing protein 19
3swm_B2e-131114522165NAC domain-containing protein 19
3swm_C2e-131114522165NAC domain-containing protein 19
3swm_D2e-131114522165NAC domain-containing protein 19
3swp_A2e-131114522165NAC domain-containing protein 19
3swp_B2e-131114522165NAC domain-containing protein 19
3swp_C2e-131114522165NAC domain-containing protein 19
3swp_D2e-131114522165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g055570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614926e-84AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankCP0026876e-84CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankT15B166e-84AF104919.1 Arabidopsis thaliana BAC T15B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010466871.11e-142(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.18e-16NAC domain containing protein 3