PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g054580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 33092.3 Da PI: 6.3125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.8e-09 | 159 | 203 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L Csa13g054580.1 159 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 203 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 152 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 156 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 159 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAGNNPHENL SDQTPSDDFF EQILGLPNFS ASSGAGLSGV DGGLGGGAPP MMLQLGSGDE 60 GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGGGFLRPE GGHGSGKRFS DDVVDNRCSS 120 MKPVFHGQPM QQPAPSAPHQ PTSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL 180 VPTVNKTDRA AMIDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDMPL SSSVEDETGD 240 GGRAPQPAWE KWSNDGTERQ VAKLMEENVG AAMQLLQSKA LCMMPISLAM AIYHSQPPDT 300 SSVVKPETNP PQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g054580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367328 | 0.0 | AF367328.1 Arabidopsis thaliana AT4g02590/T10P11_13 mRNA, complete cds. | |||
GenBank | AK316748 | 0.0 | AK316748.1 Arabidopsis thaliana AT4G02590 mRNA, complete cds, clone: RAFL07-83-K16. | |||
GenBank | AY143951 | 0.0 | AY143951.1 Arabidopsis thaliana At4g02590/T10P11_13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456011.1 | 0.0 | PREDICTED: transcription factor UNE12 | ||||
Swissprot | O22768 | 0.0 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | V4L2M5 | 0.0 | V4L2M5_EUTSA; Uncharacterized protein | ||||
STRING | XP_010456011.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-163 | bHLH family protein |
Publications ? help Back to Top | |||
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