PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g050240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 1700aa    MW: 190682 Da    PI: 6.4555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g050240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.5e-29231288159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy WrKYGqK+ kg  fprsYY+Ct++gC vkkkv+rs  d++v+e++Y+g Hnhe
  Csa13g050240.1 231 VDDGYYWRKYGQKSAKGEMFPRSYYKCTHPGCLVKKKVDRSV-DGQVTEVVYKGVHNHE 288
                     59****************************************.***************8 PP
2WRKY98.83.5e-31382439259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK+vkg+++prsY++C+  gC v+k+v+rsa+dpk+v++tYeg+Hnh+
  Csa13g050240.1 382 DDGFRWRKYGQKVVKGNPYPRSYFKCSKVGCGVRKHVQRSATDPKAVVTTYEGKHNHD 439
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147714.46856128IPR003822Paired amphipathic helix
SuperFamilySSF477629.55E-1963126IPR003822Paired amphipathic helix
Gene3DG3DSA:1.20.1160.111.8E-1666126IPR003822Paired amphipathic helix
PfamPF026716.7E-1480125IPR003822Paired amphipathic helix
Gene3DG3DSA:2.20.25.802.6E-25229290IPR003657WRKY domain
SuperFamilySSF1182909.02E-24230290IPR003657WRKY domain
SMARTSM007742.5E-32231289IPR003657WRKY domain
PROSITE profilePS5081123.02232290IPR003657WRKY domain
PfamPF031061.8E-22232288IPR003657WRKY domain
Gene3DG3DSA:3.30.200.204.2E-29319348No hitNo description
Gene3DG3DSA:2.20.25.805.7E-33366441IPR003657WRKY domain
SuperFamilySSF1182901.29E-27373441IPR003657WRKY domain
PROSITE profilePS5081135.634376441IPR003657WRKY domain
SMARTSM007744.4E-37381440IPR003657WRKY domain
PfamPF031061.1E-24382439IPR003657WRKY domain
SuperFamilySSF522001.96E-8508630IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525406.98E-37646907IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.9E-17667865IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.4E-8680818IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003646.0E-14684699No hitNo description
PRINTSPR003646.0E-14760774No hitNo description
SuperFamilySSF467854.35E-7886988IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520581.87E-4110051300IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.0E-3510111287IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003646.0E-1411621178No hitNo description
Gene3DG3DSA:3.30.200.204.2E-2914281542No hitNo description
SuperFamilySSF561122.02E-7614301688IPR011009Protein kinase-like domain
PROSITE profilePS5001148.54114321685IPR000719Protein kinase domain
SMARTSM002201.0E-8114321685IPR000719Protein kinase domain
PfamPF000691.1E-6114331685IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.0E-4815431687No hitNo description
PROSITE patternPS00108015531565IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0007165Biological Processsignal transduction
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1700 aa     Download sequence    Send to blast
MSEKEESTGA ADAASDYYQR VVSSGEGNNS SSSSDVDARF KRKSSTGLMV SQSPSVSTVS  60
SHGIEAYLES VKDKFQDDKE KYDTFLEVMK DYNDQSRDDT NGIIARVKDL FKDHDDLLLG  120
FNIFLPRWYQ ITLPPKDETP VEFLDRFEGP YGMTYQQVVA QAVQGIQAHV NMQPQSEYTH  180
SSVVQSFPTG QPQILTLAPD SSLPAHSSTS ASGITTIQHG SKQPLIVDKR VDDGYYWRKY  240
GQKSAKGEMF PRSYYKCTHP GCLVKKKVDR SVDGQVTEVV YKGVHNHEPP KRGTTTNLSW  300
GSIHNNRRSS GLAASQFSSN KQQEAASDSE EVNSGDTAED EPETKRRIKE VEDWEPAAAT  360
SHRTVREPVF TVRTLSEVDL IDDGFRWRKY GQKVVKGNPY PRSYFKCSKV GCGVRKHVQR  420
SATDPKAVVT TYEGKHNHDL PAAKSSSHGS VIAENSANFA SFPPTSSKNL QNAELSIGFP  480
RSQSLFVDEA LTDTSDIFGP PSTSVTFSAS KDYDVVIIYG RGDISNDDFI SHLRASLCRR  540
GISVYEELNE GDAIPQCWVL IILLTSTYVP SNLLHILERQ HTDNLVIYPI FYRLSPYDFV  600
CNSKNYEIFF LFDEPKRWQD ALKEISQMPG YTLTDKSESN IIDEIVRDTS KVLCYGDKVN  660
MIGMDMQVEE ILSLLCIESL DVRSIGIWGT VGIGKTTIAE EIFRRISVQY ETSVFLKDLH  720
KQVEVKGHDA VKEDFLSKVL EIEPHIIRVS DIKTSFLRSR LQRKRVFVIL DDVNDYKDVE  780
TFLGKLNYFG PGSRLIMTSR NRRVFVLCKM DHVYEVKPLD IPKSLLLLNH GISQTVLSPE  840
VYKTMSLELV KFSNGNPQVL QFLSSIDGEW NRLSQEVQNI SPIHIPGIYE RSCCGLDDNE  900
RSIFLDIACF FNRMDKDNVA MLLDGCGFSA HVGFKGLVDK SLLTISQHNL VDMLGFIQAT  960
GREIVLQQSA DRPGDRSRLW NAEDIRDVFI YDTGTSAIEG IFLDMLNLTF DATPNLFEKM  1020
CNLRLLKLYC SKVEEKHGVY FPQGLEYLPS KLRLLHWEHY PLSSLPKSFN PENLVELNLS  1080
SSCTKKLWKG KKSLEKLKRM TLSYSYQLTK IPRLSSAPNL ELLDLEGCNS LLSISQSISY  1140
LTKLVFLNLK DCSKLESIPS MLSLESLKIL NLSGCIKLEN FPEISPNVRE VYMGGTMIQE  1200
IPSSIKNLVL LEKLDLENSR HLKKLPTSIC KLKHLETLNL SGCTSLERFP DLSRRMKCLR  1260
FLDVSRTAIK ELPSSISYLT ALEELRFVDS RNLLKFPIVT NPNASFTELM PPESNKMDNL  1320
GTPADEEVVV GGPIENRRGI KGVRPPVLNP PIAMKRPPIL GGSSWDFLTH FAPSDEEKAM  1380
EEKVEAEETE AMFIQLRDTE GCSYTTNKGD SSMTVSNTSS VYASEGSIIT SWQKGQLLGQ  1440
GSLGSVYEGI SGDGDIFAVK EVSLSLLDQG SRTQECIQQL EGGIALLSQL QHRNIVRYRG  1500
TAKDESNFYI FLELVTEGSL QKLYQRYQLK DSIVFSYTRQ ILDGLKYLHD RGVIHRDIKC  1560
ANVLVDANGA VKLAYFGLAK VIDIKSHRGT PLWMAPEVLN PTHSDGYGSP ADIWSLGCTV  1620
LEMLTGQVPY SDYEPVAAMY KIATGTLPKI PDTLSLDARH FILKCLKVKP EERPTATELL  1680
NHPFVRRPLP SSGSRSGLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2clq_A2e-451437168629283MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5
2clq_B2e-451437168629283MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5
6e2m_A2e-45140316862283Mitogen-activated protein kinase kinase kinase 5
6e2m_B2e-45140316862283Mitogen-activated protein kinase kinase kinase 5
6e2n_A2e-45140316862283Mitogen-activated protein kinase kinase kinase 5
6e2n_B2e-45140316862283Mitogen-activated protein kinase kinase kinase 5
6e2o_A2e-45140316862283Mitogen-activated protein kinase kinase kinase 5
6e2o_B2e-45140316862283Mitogen-activated protein kinase kinase kinase 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g050240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496380.0AL049638.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084085.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 19
SwissprotQ9SZ670.0WRK19_ARATH; Probable WRKY transcription factor 19
TrEMBLA0A178UW040.0A0A178UW04_ARATH; WRKY19
STRINGXP_010422158.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.20.0WRKY family protein
Publications ? help Back to Top
  1. Su SH,Krysan PJ
    A double-mutant collection targeting MAP kinase related genes in Arabidopsis for studying genetic interactions.
    Plant J., 2016. 88(5): p. 867-878
    [PMID:27490954]