PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g043260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 231aa    MW: 24755.5 Da    PI: 4.9673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g043260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.7e-07198223630
                     HHHHHHHHHHHHHHHHHHHCTSCC.C CS
             HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                     +++Er RR ri +++ +L+el+P+ +
  Csa13g043260.1 198 SIAERVRRTRISDRIRKLQELVPNmD 223
                     689********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.29192230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-6195228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.48E-5196230No hitNo description
Gene3DG3DSA:4.10.280.102.5E-5197224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQSTSVGSSG GGDDGESRGG GGGGGLSRSG LSRIRSAPAT WLEALLEEDE EESLKPNLGL  60
TDLLTGSSND LPISRGSFEF PIPVEQGLYQ QGGFHRQNST PADFLSGSDV FIQSFGIPAN  120
YDYLSGNIDV SPGSKRSREM EALFSSPEFT SQMKGEQSSG QVPAGVSSMT DMNMENLMDD  180
SVAFRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP NMDKVISLSK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g043260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303840.0AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13.
GenBankBT0104230.0BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455333.11e-163PREDICTED: transcription factor bHLH81-like
SwissprotQ9M0R01e-124BH081_ARATH; Transcription factor bHLH81
TrEMBLR0HCF11e-122R0HCF1_9BRAS; Uncharacterized protein
STRINGXP_010455333.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]