PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g028610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 275aa    MW: 30684.6 Da    PI: 6.4545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g028610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.47.7e-10116146230
                     --SS-EEEEEEE--TT-SS-..EEEEEE-ST CS
            WRKY   2 dDgynWrKYGqKevkgsefp..rsYYrCtsa 30 
                     +Dg++WrKYGqK++ g++fp  r+ + C++a
  Csa13g028610.1 116 EDGFSWRKYGQKDILGAKFPsyRGKHSCSQA 146
                     8******************955666777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-7113145IPR003657WRKY domain
SuperFamilySSF1182908.63E-7114144IPR003657WRKY domain
PROSITE profilePS508118.8115184IPR003657WRKY domain
SMARTSM007745.2E-5115145IPR003657WRKY domain
PfamPF031061.8E-6116144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEKKSSNGDW EKMKREINEL MTEGRDYAHQ FRSASSQETR EHLAKKILES YHKSLTIMNY  60
SGEQDSSHAH DGGGSPKSDD SDQEPLVITK SSKKSMPKWT RKVIITPGAG IDRTLEDGFS  120
WRKYGQKDIL GAKFPSYRGK HSCSQAANVG STIPAQNLEP NQTQEHENLD IVKESLDNYN  180
HEAHLHHNLH YPMSSTPNLE SNNPYMLQMR DHNMDFFGST SFSSDLGTNI NYNFPASGSA  240
SHSTSNSPST IPLESPFDSY DPNHPYGGGF GGFY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g028610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0884011e-130AY088401.1 Arabidopsis thaliana clone 6469 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454702.10.0PREDICTED: probable WRKY transcription factor 30
SwissprotQ9FL621e-154WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLD7M2H21e-161D7M2H2_ARALL; Uncharacterized protein
STRINGXP_010454702.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-145WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]