PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g025730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 38375.4 Da PI: 5.0852 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.9 | 1.7e-48 | 23 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGf+F+Ptd el+++yLk++++g + ++ evi++++iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s Csa13g025730.1 23 FPGFKFSPTDVELISYYLKRRMDGLERSV-EVIPDAEIYNFEPWDLPdKSIVKSDNEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS- 115 69************************999.99***************778888999**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+k+tLvf+ grapkge+tdW+mhey + Csa13g025730.1 116 GSEVIGTKRTLVFHIGRAPKGERTDWIMHEYCM 148 9******************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-54 | 11 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.717 | 22 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-24 | 24 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
METEAFGVSS KATAASVEAS TVFPGFKFSP TDVELISYYL KRRMDGLERS VEVIPDAEIY 60 NFEPWDLPDK SIVKSDNEWF FFCARGKKYP HGSQNRRATK MGYWKATGKE RDVKSGSEVI 120 GTKRTLVFHI GRAPKGERTD WIMHEYCMKG VSLDDAMVVC RVRRNKEYHS GTSQKTPQPN 180 VAAEKHMTLQ NGATSSESPS DWDNLVDFYL AGESGDKLLG EMAESSENQQ VHNEEDFFAD 240 ILRDEIINLD EAVKTGNTSN EVPTLESASM EIRVLPLPNM IDKQMSSLLE ERPSQKKKGQ 300 DATESLSSCF VGLYSIKSVN KARWDVIICV VALVAMLFYL E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-40 | 24 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-40 | 24 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-40 | 24 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-40 | 24 | 166 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-40 | 24 | 166 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-40 | 24 | 166 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g025730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF385685 | 0.0 | AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds. | |||
GenBank | AY078006 | 0.0 | AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454491.1 | 0.0 | PREDICTED: NAC domain-containing protein 89-like | ||||
Swissprot | Q94F58 | 0.0 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | R0HBJ4 | 0.0 | R0HBJ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010454491.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 0.0 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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