PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g021200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 152aa MW: 17795.1 Da PI: 8.1775 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.1 | 2.2e-16 | 17 | 133 | 3 | 126 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +Gf F+P++eel+ +yL k+ ++ +++++ ++ + y +Pw+L+++ k+ e +ew++F+kr++k + Wk tg k Csa13g021200.1 17 VGFGFSPSEEELIRDYLLSKLGFDQdqrNKIFTLEDKENSYAEKPWQLNHT-KNdifEPNEWFYFVKRNRKVK------------GWKDTGGLKY 98 7*******************98777333444333445589999*****842.22245778******9877642............3*****9887 PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmh.ey 126 v + +g+++g k+ L fy +++p+ W+m ey Csa13g021200.1 99 VNVVsrkTGRVIGKKRNLSFYVKSKPS----VWTMTtEY 133 76654457888**********666665....79985356 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-20 | 15 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.5 | 15 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-11 | 17 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
MAMVDECYAD DEEDELVGFG FSPSEEELIR DYLLSKLGFD QDQRNKIFTL EDKENSYAEK 60 PWQLNHTKND IFEPNEWFYF VKRNRKVKGW KDTGGLKYVN VVSRKTGRVI GKKRNLSFYV 120 KSKPSVWTMT TEYSSIDKSF RNQVLCHLKG P* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g021200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454060.1 | 1e-110 | PREDICTED: NAC domain-containing protein 35 | ||||
TrEMBL | A0A178UJG9 | 5e-53 | A0A178UJG9_ARATH; NAC088 | ||||
STRING | XP_010454060.1 | 1e-109 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18300.1 | 2e-56 | NAC domain containing protein 88 |