PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 169aa    MW: 19504.9 Da    PI: 6.2818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.86.9e-26171483127
             NAM   3 pGfrFhPtdeelvveyL.kkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra....tksgyWk.atgk 88 
                     +GfrFhPtd+elv + L ++kv+++++++ e  +++d+y  ePw+L + +++   e +ewy+F++ +++ + + r++r+    t +g Wk   gk
  Csa13g020970.1  17 VGFRFHPTDQELVRYCLgRNKVAKTSNKVLELEDKTDLYAKEPWRLTH-TETdffEPNEWYYFVTLAENVTGKLRTSRKvkgeTCEGCWKeVLGK 110
                     7************99994457888889998888888**********83.222245778**********99999999997455566*****5579* PP

             NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +vls+ k+e++g k++L fy   + ++ ++ W+m ey 
  Csa13g020970.1 111 LSDVLSEdKREVIGKKRSLSFY--VKGESISSGWTMTEYY 148
                     9***99967788**********..4445578********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-2814165IPR003441NAC domain
PROSITE profilePS5100526.99615168IPR003441NAC domain
PfamPF023658.2E-1717147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSTVEKYNEN EQQEEFVGFR FHPTDQELVR YCLGRNKVAK TSNKVLELED KTDLYAKEPW  60
RLTHTETDFF EPNEWYYFVT LAENVTGKLR TSRKVKGETC EGCWKEVLGK LSDVLSEDKR  120
EVIGKKRSLS FYVKGESISS GWTMTEYYSR DGGSGSFQNQ VLCHLKGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454028.11e-122PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL04e-82R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010454028.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-41NAC domain containing protein 88