PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 161aa    MW: 18707.2 Da    PI: 8.4311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM867.1e-27171413126
             NAM   3 pGfrFhPtdeelvveyL.kkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 
                     +Gfr+hPtd+el+ + L ++kv+++++++ e  +++d+y  ePw+L + +++   e +ewy+F++ ++ +  g+rk +  t +g+Wka gk  +v
  Csa13g020920.1  17 VGFRYHPTDQELIRYCLgRNKVAKTSNKVLELQDKTDLYAKEPWRLTH-TETdffEPNEWYYFVTLAQVS--GSRKVKgETCEGRWKALGKLSDV 108
                     7************99994457888889998888999**********83.222245778*******98865..6777777999************* PP

             NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                     lsk k+e++g k++L fy +   +++++ W+m ey
  Csa13g020920.1 109 LSKdKREVIGKKRILSFYVK--GESNSSGWTMTEY 141
                     **977788**********43..33458*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-2712148IPR003441NAC domain
PROSITE profilePS5100528.54515160IPR003441NAC domain
PfamPF023651.1E-1517141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSMVEKYNEK EQHEEFVGFR YHPTDQELIR YCLGRNKVAK TSNKVLELQD KTDLYAKEPW  60
RLTHTETDFF EPNEWYYFVT LAQVSGSRKV KGETCEGRWK ALGKLSDVLS KDKREVIGKK  120
RILSFYVKGE SNSSGWTMTE YYPLDGCSFQ SQVLSHLKGP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454025.11e-117PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL07e-77R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010454025.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-40NAC domain containing protein 88