PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 709aa    MW: 79264.8 Da    PI: 6.7489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192580156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    rr+ +++t++q+++Le++F+++++p+  +r++L ++l+L+ +q+k+WFqN+R++ k
  Csa13g020090.1 25 RRHYHRHTNQQIQRLEAYFKECPHPDDLQRRQLGEELNLKPKQIKFWFQNKRTQAK 80
                    78999************************************************988 PP
2START105.58.8e-342414633206
                     HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a +e++ +++ ee +W+kss       +  n++++  k++  k+   ++e +++++vv  ++  lv  +ld+  +W + ++    +a+t+ v
  Csa13g020090.1 241 AAKAVAEVMILIQMEESLWKKSSiddrlviDPTNYEKCFAKISHFKGpsGRSESSKEVVVVQTDARILVDMFLDTE-KWARLFPtivnEAKTIHV 334
                     6788899999********************************776669999***************9999999999.999999999999999999 PP

                     ECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  85 issg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ++s      +  ++++ ++  lsplvp R+f ++R+++q+++ +w+i+dvS + ++    +s    ++++pSg lie ++ng skvtw+ehv++ 
  Csa13g020090.1 335 LDSMdngrqTLATVIYEQMHILSPLVPpREFIILRSCQQMEENVWMIADVSCNLPNVAF-ESMAPICTKHPSGVLIEALPNGCSKVTWIEHVEVT 428
                     9887778*999999999999999*****************************9999988.5666678***************************9 PP

                     SSX.XHHHHHHH.HHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grl.phwllrsl.vksglaegaktwvatlqrqcek 206
                     +++ ph l+r l +  gl  ga++w+ tl+r ce+
  Csa13g020090.1 429 DKMrPHRLYRDLfLYGGLGYGARRWTVTLERMCER 463
                     99845*****97257789***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.63E-18882IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-191987IPR009057Homeodomain-like
PROSITE profilePS5007116.732282IPR001356Homeobox domain
SMARTSM003892.9E-172486IPR001356Homeobox domain
PfamPF000461.3E-162580IPR001356Homeobox domain
CDDcd000862.06E-172583No hitNo description
PROSITE profilePS5084841.07230466IPR002913START domain
SuperFamilySSF559617.55E-26232463No hitNo description
CDDcd088755.97E-84234462No hitNo description
SMARTSM002342.5E-15239463IPR002913START domain
PfamPF018526.5E-28241463IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-10293426IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MDSSRDDSSS DERGTSTDTN NNQDRRHYHR HTNQQIQRLE AYFKECPHPD DLQRRQLGEE  60
LNLKPKQIKF WFQNKRTQAK SHNERAGNAV LRAENMRMRR ENEAMEDALK NVVCAPCGGR  120
GFGREEKQRN IQKLRSENAF LKREFERVSN FLAQQGGHSM PSVGAFTYPH GPSTYGSTSN  180
NRRASYRTSS NHLPQPSCSL RGPYARGNIS INQPHQLQNE IPVHHFPPLS QMEKLVMFET  240
AAKAVAEVMI LIQMEESLWK KSSIDDRLVI DPTNYEKCFA KISHFKGPSG RSESSKEVVV  300
VQTDARILVD MFLDTEKWAR LFPTIVNEAK TIHVLDSMDN GRQTLATVIY EQMHILSPLV  360
PPREFIILRS CQQMEENVWM IADVSCNLPN VAFESMAPIC TKHPSGVLIE ALPNGCSKVT  420
WIEHVEVTDK MRPHRLYRDL FLYGGLGYGA RRWTVTLERM CERLYLSSIS DFPNNDYAGV  480
VQTIEGRRSV MKLGERMLKD FAWMINMEEK LDFSQQSETN NSGVSIAVRL NNEAGQPPGL  540
ILCAGSSLCL PLPPPQWDVL CNGNPVTEPA RFVTGTDTKN NVNFIQASSG GDNNSKLMIL  600
QDGFIDALGG MVVYAPMDLD TAAAAISGQV DPSAIPILPS GFIISRDGRP NSAEDPDGGS  660
STLLTVAFQI LVCDPNYSAA FKVEESAATV NNVISSTVQR IKAMLNCD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026843e-48CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21H23e-48AC007894.2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453918.10.0PREDICTED: homeobox-leucine zipper protein HDG9-like
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLR0H7P30.0R0H7P3_9BRAS; Uncharacterized protein
STRINGXP_010453918.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]