PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g020060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 532aa MW: 58712.7 Da PI: 7.7025

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g020060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++v+a k++G W++I +++g ++t+ q++s+ qk+ Csa13g020060.1 73 RERWTDEEHKKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 117 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.02E-16	67	122	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.277	68	122	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.6E-16	71	120	IPR006447	Myb domain, plants
SMART	SM00717	4.9E-13	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	73	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	73	113	IPR009057	Homeodomain-like
CDD	cd00167	6.99E-10	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MASSPLTANV QILIREAMAS SPLTANVQVA KAPLRNRVEE ETADKQIQFN DKSFGGNDYA 60 PKIRKPYTIT KERERWTDEE HKKFVEALKL YGRAWRRIEE HVGTKTAVQI RSHAQKFFSK 120 VAREATGGDG CSVEPIVIPP PRPKRKPAHP YPRKFGNEAD GTSRSVSPSE RDNRSPTSVL 180 STVGSEALCS LDSSSPNRSL SPVSSASPPA ALTTTANAPE ELETLKLELF PRERLLHTES 240 SVKEPTKQSL IKLFGKTVLV SDSGMSSSLT TSTYCKSPIQ PLPRKPSPSK TLPIIKNGQE 300 ELLSCWIQVP LKQEDVENRC LDSGKAVQNE GSSTGSNSGS VDDTGHTDKT SEPETMVCQW 360 EFKPSERSAF SELRRTNSES NARGFGMSSS LTTSTYCKSP IQPLPRKPSP SKTLPIIKNG 420 QEELLSCWIQ VPLKQEDVEN RCLDSGKAVQ NEGSSTGSNS GSVDDTGHTD KTSEPETMVC 480 QWEFKPSERS AFSELRRTNS ESNARGFGPY KKRKMMIEEE EQEEQEIHLH L*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MASSPLTANV QILIREAMAS SPLTANVQVA KAPLRNRVEE ETADKQIQFN DKSFGGNDYA  60
PKIRKPYTIT KERERWTDEE HKKFVEALKL YGRAWRRIEE HVGTKTAVQI RSHAQKFFSK  120
VAREATGGDG CSVEPIVIPP PRPKRKPAHP YPRKFGNEAD GTSRSVSPSE RDNRSPTSVL  180
STVGSEALCS LDSSSPNRSL SPVSSASPPA ALTTTANAPE ELETLKLELF PRERLLHTES  240
SVKEPTKQSL IKLFGKTVLV SDSGMSSSLT TSTYCKSPIQ PLPRKPSPSK TLPIIKNGQE  300
ELLSCWIQVP LKQEDVENRC LDSGKAVQNE GSSTGSNSGS VDDTGHTDKT SEPETMVCQW  360
EFKPSERSAF SELRRTNSES NARGFGMSSS LTTSTYCKSP IQPLPRKPSP SKTLPIIKNG  420
QEELLSCWIQ VPLKQEDVEN RCLDSGKAVQ NEGSSTGSNS GSVDDTGHTD KTSEPETMVC  480
QWEFKPSERS AFSELRRTNS ESNARGFGPY KKRKMMIEEE EQEEQEIHLH L*

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g020060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF378860	0.0	AF378860.1 Arabidopsis thaliana AT5g17300/MKP11_15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453914.1	0.0	PREDICTED: protein REVEILLE 1 isoform X1
Refseq	XP_010453915.1	0.0	PREDICTED: protein REVEILLE 1 isoform X2
Swissprot	F4KGY6	0.0	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	R0FFU0	0.0	R0FFU0_9BRAS; Uncharacterized protein
STRING	XP_010453915.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-175	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]