PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g020020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 503aa MW: 57660.3 Da PI: 5.3675

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g020020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.4e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk++PwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v Csa13g020020.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIISEVDLYKCQPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLv+y+grap+g +t Wvmheyrl Csa13g020020.1 100 C-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 .8899**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.007	6	157	IPR003441	NAC domain
Pfam	PF02365	4.0E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIISE VDLYKCQPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSC RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP IAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTAS 180 NLSGNSSFDV CSDLEISSNT HHQGLPYSNS TDTQPRFGNA NSIGVHDDWS QFLSQDMPSS 240 FSGYGPYTTQ SKVNTALECE MLQHQMSLPP LRVENSPVQA IDFSNRLMNQ NSGQSGFDNF 300 TFAPSNSNQF YNNNNNVDDH LRNIGNLDEQ LLDAGNSTWM RMSNENLNQS LIEGDEILPS 360 FERNDPDLEY YGGSRANTIT NIEIDDFFSF EDNVEDNDNS NITLNTSGVE MIEEETIVDH 420 KMLISTPQTT EILYYQVVPS QILKIHISPR VQRSEERAAV VLLMEEDKKD SWFQKAENVA 480 KMRLKQISLV AKRYYKSLTI IF*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIISE VDLYKCQPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSC RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP IAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTAS  180
NLSGNSSFDV CSDLEISSNT HHQGLPYSNS TDTQPRFGNA NSIGVHDDWS QFLSQDMPSS  240
FSGYGPYTTQ SKVNTALECE MLQHQMSLPP LRVENSPVQA IDFSNRLMNQ NSGQSGFDNF  300
TFAPSNSNQF YNNNNNVDDH LRNIGNLDEQ LLDAGNSTWM RMSNENLNQS LIEGDEILPS  360
FERNDPDLEY YGGSRANTIT NIEIDDFFSF EDNVEDNDNS NITLNTSGVE MIEEETIVDH  420
KMLISTPQTT EILYYQVVPS QILKIHISPR VQRSEERAAV VLLMEEDKKD SWFQKAENVA  480
KMRLKQISLV AKRYYKSLTI IF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	1	157	15	168	NAC domain-containing protein 19
3swm_B	2e-54	1	157	15	168	NAC domain-containing protein 19
3swm_C	2e-54	1	157	15	168	NAC domain-containing protein 19
3swm_D	2e-54	1	157	15	168	NAC domain-containing protein 19
3swp_A	2e-54	1	157	15	168	NAC domain-containing protein 19
3swp_B	2e-54	1	157	15	168	NAC domain-containing protein 19
3swp_C	2e-54	1	157	15	168	NAC domain-containing protein 19
3swp_D	2e-54	1	157	15	168	NAC domain-containing protein 19
3ulx_A	2e-54	2	157	11	168	Stress-induced transcription factor NAC1
4dul_A	2e-54	1	157	12	165	NAC domain-containing protein 19
4dul_B	2e-54	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g020020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453910.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	R0FKW5	0.0	R0FKW5_9BRAS; Uncharacterized protein
STRING	XP_010453910.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]