PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g016910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 30191.2 Da PI: 9.216 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 99 | 121 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H Csa13g016910.1 99 SCSVCSRVYPTSRLLSIHISEaH 121 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.22 | 71 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 98 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.095 | 136 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
AMAMGMAVDT VGELAFPVWN PIRRRFPPDS PFFASGNVER ELLAKQVALD LTEDEINHLQ 60 IIVETESSRR ISCPIAGCPE RLKSLDHFED HYNARHTASC SVCSRVYPTS RLLSIHISEA 120 HDSFFQAKVA RGYDMYECLV EGCGLKFKTY KARHRHLVDK HKFPTTFEFF KRTQLSKKRR 180 EKLQRQHVSK LKHKEDKEEA SSDAKEVEDK ASVDGLVSAL STLTTADTTP SNVSFGRRHG 240 RGLTFVPRSV HREKRTEYSS APGPTN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | KKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g016910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493748 | 0.0 | AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140. | |||
GenBank | AK228356 | 0.0 | AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453529.1 | 0.0 | PREDICTED: zinc finger protein 511 isoform X1 | ||||
TrEMBL | A0A178UDE4 | 1e-180 | A0A178UDE4_ARATH; Uncharacterized protein | ||||
TrEMBL | Q0WRF4 | 1e-180 | Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein | ||||
STRING | XP_010453529.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9971 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-176 | zinc ion binding;nucleic acid binding;zinc ion binding |