PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g013340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 309aa    MW: 34590.1 Da    PI: 4.627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g013340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-05152189654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++              +iL  A++Y+k+L
  Csa13g013340.1 152 LMAERRRRKRLNDRLSMLRSIMDRT-----------SILGDAIDYMKEL 189
                     589*****************98765...........5666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.274146206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-11149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-7152205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEMELSQLNK QESNNLDVDG VKGGFTAMDQ FVPNDWNFDY LCLNNPLEET DNIDHPSSSS  60
MNIISQPPTL LHQPPQPLSP PPSLPLSSAF DYRFLEDMID SSCYPPPLIL PTSQENNIYA  120
PLMVESNSFV TTGVTNKKKS NRKLEGQPSK NLMAERRRRK RLNDRLSMLR SIMDRTSILG  180
DAIDYMKELL DKINMLQEVE QELGSNSHLN SLITNKSTVR NSLKFEVDQR EVDTHINICC  240
STKPGLLLST VSTLETLGLE IQQCVISCFS DFSLQASCSE VAEQRDFVTS EDTKQALIRN  300
AGYGGKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136158KKKSNRKLEGQPSKNLMAERRRR
2154161ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g013340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453090.10.0PREDICTED: transcription factor bHLH61-like
SwissprotQ9LXA91e-158BH061_ARATH; Transcription factor bHLH61
TrEMBLR0FFW21e-161R0FFW2_9BRAS; Uncharacterized protein
STRINGXP_010453090.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-142bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]