PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g007080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 272aa    MW: 30067.6 Da    PI: 7.3023
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g007080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.4e-3082135155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Csa13g007080.1  82 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 135
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-2079139IPR009057Homeodomain-like
PROSITE profilePS5129411.05979138IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-3181140IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-2483135IPR006447Myb domain, plants
PfamPF002499.7E-885134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MREEDSNWFS KWEEELPSPE ELIPLSQSLI TPDLAIAFDL HRRNNNENTA QPLPQTTPPQ  60
PNSSAEFAGD STGDEPARTL KRPRLVWTPQ LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG  120
LTRENVASHL QKYRLYLKRM QSGGGGGGGG GSVGDSDHLF ASSPVPPHFL HPTSRQSSDH  180
FIPTFVPIST QHPAAHLQPP SQFLHRQISA ANFNSPTKAT EQAMFFARQS QHQPVFRPAS  240
LHVHSHQVAN YTQDLESGAK TVLTLFPTRD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-3282138157Transcription factor LUX
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141151SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g007080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452413.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222104e-56MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HFE31e-159R0HFE3_9BRAS; Uncharacterized protein
STRINGXP_010452413.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.11e-134G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]