PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g006410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 563aa MW: 63024.9 Da PI: 4.3306 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.3e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ Csa13g006410.1 10 LAPGFRFHPTDEELVRYYLKRKVCNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIR 103 579**************************9.99**************95347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Csa13g006410.1 104 N-GSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 137 9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-61 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.576 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MGRDSVTTSL APGFRFHPTD EELVRYYLKR KVCNKPFKFD AISVTDIYKS EPWDLPDKSK 60 LKSRDLEWYF FSMLDKKYSN GSKTNRATEK GYWKTTGKDR EIRNGSRVVG MKKTLVYHKG 120 RAPRGERTNW VMHEYRLSDE DLKKAGVPQE AYVLCRIFQK SGTGPKNGEQ YGAPFLEEEW 180 EEDAMTYVPE QDAFSEGLAV DDDVYVDIDG IDEKPENLVI YDAVPILPNY CHGESSNNVE 240 SGNHSDSGNY IQPGNYVVDS GGYFEQPIET FEEDKKPIIR DGSIQPCSLF PEEHIDCGVQ 300 DENAVNLDSS NNNVFVADTC YSDIPIDTNY LPDEPFMDPN NSLPLNDGLY LETNDLSIAQ 360 QDDFNFEDYL NDFNFDDDGF TLDDPELDAL LDQKPAPEEL EKEVAEGKEM VEKKESGEGS 420 SSKQDADLTD FDSASKYPFL KKTSHMLGAI PAPSSFASQF KSKDAAIRLH SAQSSGSVHV 480 TAGMIRISNM TLAADSSMGW AYDKNGNLNV VLSFGVVQRD DEPNASGSKT GTTETRAMLI 540 FMFLWVLVLS VSFKIGTMVS AR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g006410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099609 | 0.0 | AY099609.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. | |||
GenBank | AY128859 | 0.0 | AY128859.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010452337.1 | 0.0 | PREDICTED: NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | D7LXI4 | 0.0 | D7LXI4_ARALL; Uncharacterized protein | ||||
STRING | XP_010452336.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |