PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g006400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 387aa    MW: 43775.3 Da    PI: 6.5228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g006400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.54.9e-44281561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeel+++yLk+kv+gk+++l ++i evd y++ePw+Lp+  k+k+++kewyfFs  dkky++g+  +r    gyW+atgkdke+ 
  Csa13g006400.1  28 LAPGFRFHPTDEELITYYLKRKVQGKPMRL-DAIGEVDFYEHEPWNLPEhsKLKTRDKEWYFFSALDKKYSSGTSVKR----GYWHATGKDKEIR 117
                     579***************************.99**************9435889999**************9998888....9************ PP

             NAM  94 sk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          k+ ++g+ k+ vf+kg r+++g++t+Wvmheyrl
  Csa13g006400.1 118 GGdgeKSIAIGMMKIHVFHKGrRSSNGRRTNWVMHEYRL 156
                     985444455**********9978899***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5023176IPR003441NAC domain
PROSITE profilePS5100550.07828176IPR003441NAC domain
PfamPF023653.4E-2530156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDRDSKKPCG ALPAPREVQV NAAAVTSLAP GFRFHPTDEE LITYYLKRKV QGKPMRLDAI  60
GEVDFYEHEP WNLPEHSKLK TRDKEWYFFS ALDKKYSSGT SVKRGYWHAT GKDKEIRGGD  120
GEKSIAIGMM KIHVFHKGRR SSNGRRTNWV MHEYRLAEND EGLQVDAYVL CKVFRKQNPG  180
EPIESRYAPF VEQEWNDDGE RAVSPVPVVV DANRINETQQ IDDSNTKLDD EALKRAPILP  240
FCVLNKQAPV LLPLFQHKRK RRVDSSGNSN SSSHMTQDHC SSSTETIVDT GAAEPEPLTN  300
SEQTSVLKSR LGSMIEDLGN KQEEAVAEEV PATTRSITKS IQDLMKEKDE MVVLRETQIR  360
ETIEAEILIN YLEDQIKTLR TKGPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-372718119173NAC domain-containing protein 19
3swm_B4e-372718119173NAC domain-containing protein 19
3swm_C4e-372718119173NAC domain-containing protein 19
3swm_D4e-372718119173NAC domain-containing protein 19
3swp_A4e-372718119173NAC domain-containing protein 19
3swp_B4e-372718119173NAC domain-containing protein 19
3swp_C4e-372718119173NAC domain-containing protein 19
3swp_D4e-372718119173NAC domain-containing protein 19
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g006400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456393.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQY06e-87NAC52_ARATH; NAC domain containing protein 52
STRINGXP_010456393.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2022046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.13e-91NAC domain containing protein 77
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]