PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g002370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | E2F/DP | ||||||||
Protein Properties | Length: 293aa MW: 33044.6 Da PI: 7.5463 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.8 | 8.7e-24 | 51 | 133 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 + +Lr+++ + +++k e+ +i+t++eva+e++s+ ++kn+rRR+YD+lNV++al++i++ +k+eirwkg Csa13g002370.1 51 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 133 5799999999...****9999********************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 7.0E-99 | 2 | 290 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 7.2E-36 | 46 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.4E-28 | 49 | 133 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.35E-18 | 52 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 8.4E-20 | 52 | 133 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 9.74E-29 | 140 | 241 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.23E-38 | 140 | 282 | No hit | No description |
SMART | SM01138 | 9.2E-51 | 140 | 292 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 3.9E-33 | 141 | 262 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSMEMELFVT PEKQRQHPSV SLEKTPVRRK LIVDDDSEIG SEKKGQSRTA GGGLRQFSVM 60 VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY NEKNIRRRVY DALNVFMALD 120 IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMNSVQKKA AFLKELREKV SSLESLMSRN 180 QEMVVKTQGP AEGFTLPFIL LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL 240 MQEQKQQQNR VSSSSSTQQQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-25 | 51 | 135 | 9 | 90 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g002370.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ319027 | 0.0 | AJ319027.1 Arabidopsis thaliana partial mRNA for E2F dimerisation partner protein (dp2a gene). | |||
GenBank | AK117135 | 0.0 | AK117135.1 Arabidopsis thaliana At5g02470 mRNA for putative DP-2 transcription factor, complete cds, clone: RAFL16-67-D16. | |||
GenBank | BT005286 | 0.0 | BT005286.1 Arabidopsis thaliana At5g02470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423860.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Refseq | XP_010452086.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Refseq | XP_010452087.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Refseq | XP_010452088.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Refseq | XP_010452089.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Refseq | XP_019084579.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Refseq | XP_019084580.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Swissprot | Q9FNY3 | 0.0 | DPA_ARATH; Transcription factor-like protein DPA | ||||
TrEMBL | R0FH09 | 0.0 | R0FH09_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423860.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010452086.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11641 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02470.3 | 0.0 | Transcription factor DP |