PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g082570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 294aa MW: 33012.6 Da PI: 5.1013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g082570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.5	2.5e-18	35	86	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ ++++K +Ka+ L +++eYI+ Lq Csa12g082570.1 35 RSKHSETEQRRRSKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 86 899***********************6..4******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.97E-20	31	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-17	31	90	No hit	No description
PROSITE profile	PS50888	17.015	33	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-16	35	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-22	35	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-14	39	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNSPDLDEQL EAEVYSNLPS RNDSSTVRRN RSSGRSKHSE TEQRRRSKIN ERFQSLMDII 60 PQNQNDQKRD KASFLLEVIE YIHFLQEKVQ MYEGSHQMWC QTQTKLIPWG NNLGSVVEVG 120 DHPQIGNDEV AASSGFLLDM QNSVDSDIDR AVSTKILEHS PISAVSSYVP TETLPQFVQH 180 DFWQPKPSCG PITCNTNELV NSDEKTSPSL STVCSQRVLH TLTEAFKSSG VNMSETVISV 240 QLSLRKRADR EYSVTAFGSE GKCDSIADEE GNSPTEMGSY CKDLNNSEKR IRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g082570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630499	0.0	AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860.
GenBank	BT033131	0.0	BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450861.1	0.0	PREDICTED: transcription factor BIM3-like
Swissprot	Q9FMB6	1e-167	BIM3_ARATH; Transcription factor BIM3
TrEMBL	R0H0C0	1e-170	R0H0C0_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010450861.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16131	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-169	BES1-interacting Myc-like protein 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]