PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 277aa    MW: 31737.3 Da    PI: 10.0042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-114484344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      WT+  d++l ++v+ +G ++W++Ia++m+ +R++  c+ rw
   Csa12g081730.1 44 GWTESQDLKLTELVEAYGLESWDLIAEKMQ-TRSAQGCRMRW 84
                     5*****************************.**********9 PP
2Myb_DNA-binding29.51.8e-0995137246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +T+ E+el +   k++G++ W+ Ia+ ++ +Rt++ ++ +++ 
   Csa12g081730.1  95 TEFTKAEEELMITTQKLYGNK-WSMIAKLLN-RRTDYAVRMYFNR 137
                      579******************.*********.********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5563792IPR017930Myb domain
SuperFamilySSF466893.71E-2239134IPR009057Homeodomain-like
SMARTSM007171.9E-94190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-204595IPR009057Homeodomain-like
PfamPF139216.3E-1345104No hitNo description
CDDcd001671.15E-94584No hitNo description
PROSITE profilePS5129411.00593143IPR017930Myb domain
SMARTSM007171.7E-593141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-1396138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MESALSAFKR PANEVGAANN ALPLREMHQE RKEKTKRPSR GKRGWTESQD LKLTELVEAY  60
GLESWDLIAE KMQTRSAQGC RMRWVHKLDP KINKTEFTKA EEELMITTQK LYGNKWSMIA  120
KLLNRRTDYA VRMYFNRNVW RQTEPNIRYS TAPLNPYAYI VPGLCLVKTK QSHRFRFKSP  180
IEFFFIIVIV WFTGNGSYEG IGIKSYSCNT PNEEATNLYA RMPVQLSGHH HHFPTFPAGS  240
SSAVFTPHVS ISQPEAADTM IRETPKFIDF LGVGHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-21381443109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445657.11e-139PREDICTED: transcriptional activator Myb-like
TrEMBLR0GYZ65e-57R0GYZ6_9BRAS; Uncharacterized protein
STRINGXP_010451809.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.13e-47myb domain protein 89