PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g077490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 116aa    MW: 13373.7 Da    PI: 10.5099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g077490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.46.3e-11958149
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk 49
                    lp G+rF+P+d e+ v++L k++ g+++++  v +++ di++ +P+dLp 
  Csa12g077490.1  9 LPIGMRFRPSDLEMAVYFLYKRAFGQQMNARIVPEDChDIFSRHPHDLPG 58
                    699***************************88888889**********94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-11660IPR003441NAC domain
PROSITE profilePS5100511.5849115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGPVTYNDLP IGMRFRPSDL EMAVYFLYKR AFGQQMNARI VPEDCHDIFS RHPHDLPGET  60
SFLPPLRKGF NESMKRKMSI GTSIGKNLKV LPSLIISGYQ LEKKRKCWIQ RRMTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g077490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450568.16e-37PREDICTED: NAC domain-containing protein 104-like
TrEMBLR0F6W57e-22R0F6W5_9BRAS; Uncharacterized protein
STRINGXP_010450568.12e-36(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-24NAC family protein