PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g062890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 345aa    MW: 38982.6 Da    PI: 9.3401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g062890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19187237256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Csa12g062890.1 187 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 237
                     59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-30186246No hitNo description
PROSITE profilePS5103222.708187244IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23187245IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-31187245IPR001471AP2/ERF domain
SMARTSM003802.9E-34187250IPR001471AP2/ERF domain
PRINTSPR003673.5E-11188199IPR001471AP2/ERF domain
PfamPF008471.4E-12188237IPR001471AP2/ERF domain
PRINTSPR003673.5E-11210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNMEDQFPKI ETSFMHDKLL SSGIYGILSS STPPQLLGVP IFLEGMKSPL LPPPSTPSYF  60
VSPHDELTSS SHQSPVASVP WNFLESFPQF DQRPDHPSKP PNLTLFLKEP KLLELSQSDS  120
NMIPYHKYIP NSLYQSDQTR NEWVEINKTL TNYPSKGFGN YWLSTTKTQP MKSKTRKVVQ  180
TTTPTKLYRG VRQRHWGKWV AEIRLPRNRT RVWLGTFETA EQAAMAYDTA AYILRGEFAN  240
LNFPDLKHQL KSGSLRCMIA SLLESKIQQI SAAQVSNSPP PPPTTVESLE PKNHIKMEPS  300
GEVVMMKKQK SHKEVMEGDG VQLSRMPSLD MDLIWDALSL PHSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21186244463ATERF1
3gcc_A7e-21186244463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g062890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089390.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLR0F9760.0R0F976_9BRAS; Uncharacterized protein
STRINGXP_010440558.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein