PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g051770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27325.4 Da PI: 4.8114 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.6 | 4.3e-10 | 20 | 59 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + k +r+v kRr++++ KA L+ L +a++av + s+ Csa12g051770.1 20 DTKQQRSVACNKRRQTLFSKAADLCLLSGANIAVFVTSPA 59 56889*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.446 | 9 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-16 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.37E-22 | 10 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-16 | 11 | 102 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-10 | 22 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTMTMKRGGT KRKIEIKKRD TKQQRSVACN KRRQTLFSKA ADLCLLSGAN IAVFVTSPAE 60 NNDVVYSFSG YSPASEIADC YLNSKPPTTS INPQTKLGFW WEDPDLYRNC DDISELNVIE 120 DRMMRTRKHL MDCLEKKEKS QFVSNSDHQN PSYSSLDENP KSSTPSSCDE IASFEQNSTL 180 SSFEKICGEP SSQATCYYDQ NHTFAFEDLY RDDDGFVESL WETEKQRSDI MSIFQEPVL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g051770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138638 | 5e-38 | AL138638.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F23N14. | |||
GenBank | CP002686 | 5e-38 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451454.1 | 1e-179 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | D7LME1 | 1e-100 | D7LME1_ARALL; Uncharacterized protein | ||||
STRING | XP_010451454.1 | 1e-178 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 2e-88 | M-type_MADS family protein |