PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g047160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 31200.1 Da PI: 4.8962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 132 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + + +r++lg+f ta eAa+a+++a+ +l+g Csa12g047160.1 132 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFETAIEAARAYDKAAFRLRG 182 69*******.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-32 | 132 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-35 | 132 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-29 | 132 | 190 | No hit | No description |
SuperFamily | SSF54171 | 3.47E-22 | 132 | 192 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-13 | 132 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.96 | 132 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MATPNEASAL FLIKKYLLDE LSPLPNTNDQ WMNEPDFSIF GSSDQTGFEF SQFESKPEII 60 DLVTPKPEAP LESNDSFTFQ SNPPRVNSQS NRKPPLKIAP PNRTKWIQFA TGEPKPEKPV 120 PAVAAVAEEK WHYRGVRMRP WGKFAAEIRD PNRRGTRVWL GTFETAIEAA RAYDKAAFRL 180 RGSKAIVNFP LEVGMWNPCA KDGHENKRKR DDDEEEVTVV EKVQKTEESH AVSCGGENVE 240 SDLTAIDDWD LTEFLSMPLL SPLSPHPPFG FSQLTVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 132 | 193 | 5 | 66 | ATERF1 |
3gcc_A | 1e-28 | 132 | 193 | 5 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g047160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161546 | 0.0 | AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97343 | 0.0 | Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449605.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 6-like | ||||
Swissprot | Q8VZ91 | 1e-148 | EF103_ARATH; Ethylene-responsive transcription factor 6 | ||||
TrEMBL | D7MBY0 | 1e-151 | D7MBY0_ARALL; Uncharacterized protein | ||||
STRING | XP_010449605.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 1e-112 | ethylene responsive element binding factor 6 |