PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g042240.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HSF

Protein Properties

Length: 192aa MW: 22781.1 Da PI: 5.2826

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g042240.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	47.1	6.4e-15	13	103	1	103
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 +Fl k+y+++++++++++isw ng++f+v+++ e +++Lpky snf F + YgFkkv +++ + e++ + F k++ e le Csa12g042240.1 13 EFLAKVYKMVDEPSTDSIISWGPNGDTFIVSKPLECCRDLLPKYLGLSNFILF----QNYGFKKVVESR--------LLEYACEGFVKDQPEGLE 95 69**********************************************998....58***999........47************ PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 ki ++++e Csa12g042240.1 96 KIAKRREE 103 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.3E-17	10	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.94E-16	11	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-18	12	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.8E-14	14	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-7	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-7	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MDPEALERKR CVEFLAKVYK MVDEPSTDSI ISWGPNGDTF IVSKPLECCR DLLPKYLGLS 60 NFILFQNYGF KKVVESRLLE YACEGFVKDQ PEGLEKIAKR REEKFNEECD KLHEERMKQM 120 RSKEDRKRHL KEMLSKLDEK YSKDVERFMQ TVAYEREWRR EAFPKELEDR LQLVLDTLQD 180 LINSTNDLVQ V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g042240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010449358.1	1e-138	PREDICTED: heat stress transcription factor A-4b-like
TrEMBL	R0H257	1e-67	R0H257_9BRAS; Uncharacterized protein
STRING	XP_010449358.1	1e-138	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14212	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	6e-22	heat shock factor 1