PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g039390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 797aa    MW: 90786.5 Da    PI: 5.5843
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g039390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.71.7e-2734135190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                     +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g+++++ ++            +++ r +r++++t+Cka+l+vk+++dg+w++ +l++
  Csa12g039390.1  34 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTDVDNglgidgfnipqaRKRGRINRSSSKTDCKACLHVKRRQDGRWVIRSLVT 128
                     6*******************************************999*********998889999****************************** PP

            FAR1  84 eHnHela 90 
                     eHnHe++
  Csa12g039390.1 129 EHNHEVF 135
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2534135IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.052212248IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6223250IPR006564Zinc finger, PMZ-type
PfamPF044349.4E-6224246IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MLSGECSNVQ FDVQRTNLEI NEGREFESKE EAFEFYKEYA NSVGFTTIIK ASRRSRMTGK  60
FIDAKFVCTR YGSKKTDVDN GLGIDGFNIP QARKRGRINR SSSKTDCKAC LHVKRRQDGR  120
WVIRSLVTEH NHEVFTGQAK SLRELGGRKK LEKQNGAIVK EQMAEVYTRE MFKKFQVEVL  180
GGVACHPKKE SEEDEVTKRT FRVQDYEQNR AFVVGWDSES SKVVCSCRLF EFKGFLCRHA  240
MIVLQMSGEL SIPSQYVLKR WTKDAKSRIN MELDQIDVES TKAQRYMDLC LRSLKLSEEA  300
SLSEESYNAV INVLNEALRK CENKSNLIQN VEESESVIAQ DLPIHEEQNN TYEMNKNDNV  360
ADTGQEHSLQ EVWKVTALQE QRNRYSILDD YLSAQHMSHE MGQINPMASN HNGYCTVHPN  420
IHSLGQSITH QRLYGTEQLS FRPEAIYERL QDMIQYSSSL TQQQSHFLFL FFLEFIASLS  480
KKYIMSKPRW FQVLTEENLD GYCENHGNFR KNIFRFESCD VVCLDGIDPY HIQPHVQVVT  540
FFDVNGLYTE EISNIFDCSQ IQNNGFVGEK GLIALRPWRG CVRSKEGCTK HVRGTSKFCS  600
FTCKQVEHVL EHEGDLSSIT RNCSVDDSRS KISEHVGDLS IHPCGDPEKI FPLKKRSRRR  660
IEFYDSDEFE ETFAYRGHRD NLTLSGFDRS CWASSRIAAR ESDLGEIDRF NDSRGIEDRP  720
IEIGFERNRD ELSGGNELSS SNELGGELGE MSGGNELGGE LGEMSEGNEL GGELGGELGK  780
MSGGNELGGE LGESEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153GRKKLEKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g039390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7634120.0AY763412.1 Arabidopsis thaliana FAR1-related 1 protein (FRS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449269.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1
RefseqXP_010449270.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1
SwissprotQ5UBY21e-174FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLR0GY701e-173R0GY70_9BRAS; Uncharacterized protein
STRINGXP_010449269.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.11e-171FAR1-related sequence 1