PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g037090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25185.8 Da PI: 8.4511 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8e-11 | 36 | 79 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++ ++ Lr+++P + ++Ka+i+e A+ YI +Lq Csa12g037090.1 36 EAERRRRQKLHVRLMALRSHVPIV-----TNMTKASIVEDAITYIGELQ 79 79*********************8.....69***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.98E-15 | 26 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.98E-13 | 27 | 83 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-12 | 29 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.113 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-8 | 36 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGGGSIFQEP VRMNRRRQVT EENKGEDESF KSPNLEAERR RRQKLHVRLM ALRSHVPIVT 60 NMTKASIVED AITYIGELQK NVQSLSEKLF EMEEAPPEID DAITILVGKP TRCSSPLPSI 120 LDFNYPAITI PDLKEEVTIT RTVTNVGPVD SVYRAVVEPP EGVKIVVEPE ALVFDWNTKK 180 LGFKVRVSSS HKSNTGYFFG SFTWTDGTRN VTIPLSVRTR VLSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g037090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF104533 | 1e-138 | EF104533.1 Capsella rubella clone E30_26 genomic sequence. | |||
GenBank | HQ379632 | 1e-138 | HQ379632.1 Capsella rubella S-locus region genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449086.1 | 9e-78 | PREDICTED: subtilisin-like protease SBT3.12 isoform X1 | ||||
Refseq | XP_010449087.1 | 9e-78 | PREDICTED: subtilisin-like protease SBT3.12 isoform X2 | ||||
Swissprot | F4JJH5 | 3e-59 | SBT3C_ARATH; Subtilisin-like protease SBT3.12 | ||||
TrEMBL | V4LX48 | 9e-64 | V4LX48_EUTSA; Uncharacterized protein | ||||
STRING | XP_010449087.1 | 3e-77 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8358 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 1e-54 | bHLH family protein |
Publications ? help Back to Top | |||
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