PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g037070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 34806.4 Da PI: 4.6984 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 199 | 234 | 15 | 55 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L++l + +K + a++L+ A+eYIk Lq Csa12g037070.1 199 KLGDRITALQQLASPF-----GKTDTASVLQDAIEYIKFLQ 234 5555666666655554.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.17 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-10 | 194 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.76E-7 | 194 | 237 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-8 | 198 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MTEEFDTARF CTGAWWSSSN SIFPGCSLPR SAEIFVDSGR YEWQNIDTLD AKTYNENYLD 60 TSTFLGNAIT DSTSQTYVSS QYNIHEEERF NPINSFLEGL FDSNEQLLVP NCPKPELFES 120 FHFFDDVFLD ESRMVSVFDH ETKDKPKDDN MQSCKSLVTC KRASEKTEEH EDIESSQPLK 180 RPRLETPSHF PSFKVRKEKL GDRITALQQL ASPFGKTDTA SVLQDAIEYI KFLQEQIIEK 240 VSSDPHLNSR GSGEQKQWSG KSSNSTHDQG CSPRQDLRSR GLCLMPISST FSNPPQHLDT 300 SSFWN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g037070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065362 | 0.0 | AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds. | |||
GenBank | AY122937 | 0.0 | AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449084.1 | 0.0 | PREDICTED: transcription factor bHLH103-like | ||||
Swissprot | Q8VZ22 | 0.0 | BH103_ARATH; Transcription factor bHLH103 | ||||
TrEMBL | G4WH97 | 0.0 | G4WH97_ARALY; Uncharacterized protein | ||||
STRING | XP_010449084.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14712 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21340.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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