PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g036650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LSD
Protein Properties Length: 151aa    MW: 16771.9 Da    PI: 5.0591
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g036650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.67.6e-126285124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    Cg+Cr lLsY rG++ V+C++C+t
  Csa12g036650.1 62 CGSCRRLLSYLRGSKQVKCSCCHT 85
                    ***********************8 PP
2zf-LSD145.81e-14100124125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C++C+ lL+YP+GApsVRC++C+ +
  Csa12g036650.1 100 CNNCKLLLMYPYGAPSVRCSSCNSI 124
                     **********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.4E-165989IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-86285IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.9E-1197125IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-12100124IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEETQMQEKE EEQKHREKEE DEEEDEEGPP PGWEAAVLPP PVAAVNHNPT TVKIPEMAQM  60
VCGSCRRLLS YLRGSKQVKC SCCHTANLVL EANQVGQVTC NNCKLLLMYP YGAPSVRCSS  120
CNSITDIREN NKRPPWSEQQ GPAKSLSSVR *
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g036650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0117601e-116BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBankBT0123841e-116BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449027.11e-107PREDICTED: protein LOL2-like
SwissprotO654262e-74LOL2_ARATH; Protein LOL2
TrEMBLR0FAZ62e-77R0FAZ6_9BRAS; Uncharacterized protein
STRINGXP_010449027.11e-107(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-67lsd one like 2